Pairwise Alignments

Query, 826 a.a., bacterial surface antigen (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 788 a.a., membrane protein from Pseudomonas simiae WCS417

 Score =  569 bits (1467), Expect = e-166
 Identities = 306/804 (38%), Positives = 478/804 (59%), Gaps = 41/804 (5%)

Query: 27  QPFEVTDIQVEGLQRVALGAALLSLPVKVGDTVDQLKLQQAIKSLYASTNFENISVSHED 86
           Q F+++DI++ GLQRV+ G+   +LP+ VGD  D  +L  + ++L+ +  F++I +S E 
Sbjct: 22  QGFKISDIRINGLQRVSAGSVFGALPLNVGDEADDRRLVDSTRALFKTGYFQDIQLSREG 81

Query: 87  GVLIVKVTERPTISAVTFEGNKDIKDEQLQESLDGSGVKVGESLDRTMLTGIEKGLQDFY 146
            VLI+ V ERP+++++ FEGNK I  + L + +  SG+   E   R  L G+   LQ  Y
Sbjct: 82  DVLIINVVERPSVASIEFEGNKAIATDDLMKGMKQSGLSESEIFQRATLEGLRNELQRQY 141

Query: 147 YGVGKYGAKVEAQVINLPRNRVELKFKFTESLAAEIRQINVVGNHEFTDAELIGMLELKD 206
              G+Y A V+ +V+  PRNRV LK K  E   A I+ INVVGN  F DA L+    LK 
Sbjct: 142 VAQGRYSASVDTEVVPQPRNRVGLKIKIDEGEVASIQHINVVGNTVFADAALLDQFTLKT 201

Query: 207 YVAWWDLF-GERRYQKQKLQADLETIKTYYHNKGYIRFEVTSTQVAMTPDRKGLYITINV 265
              W   F  + +Y ++KL  DLE ++++Y ++GYI  ++ STQV+MTPD+K +YIT+N+
Sbjct: 202 S-NWLSFFRNDDKYAREKLSGDLERLRSFYLDRGYINMDIASTQVSMTPDKKHVYITVNI 260

Query: 266 NEGEKYKVKDVNLTGDLMGREELMKSILPIKAGDMYNGGDVTFAEEMYSKYLGRFGYAYP 325
            EG+KY V+DV L+G+L   ++ ++++L +K G +++   +T   ++ ++ LG  GY + 
Sbjct: 261 QEGQKYTVRDVKLSGELKVPQDQVQALLLVKKGQVFSRKLMTTTSDLITRRLGNDGYTFA 320

Query: 326 EVKTYPEIDDKTKEVTLNINIKPGKRVYVRSINFTGNTVTEDEVMRRELRQMEGAWLNSA 385
            V   P++ +    V +  +++PGKR YV  INF GNT T+D+V+RRE+RQMEG W ++ 
Sbjct: 321 NVSGTPQVHEADHTVDITFSVEPGKRAYVNRINFRGNTKTDDKVLRREMRQMEGGWASTY 380

Query: 386 QVEQSKARLNRLGFFETVDTETIQVPGTDDLVDVAVKVKEQPSGSFNAGVGYGTESGLSL 445
            ++QSK RL RLG+F+ V+ ET  V G DD +DV   V+EQ SGS  A VG+   SGL L
Sbjct: 381 LIDQSKVRLERLGYFKEVNVETPAVTGLDDQLDVNYAVQEQASGSITASVGFAQSSGLIL 440

Query: 446 QFGVQQNNFLGTGNQAGVSLSTNKYSKNVNLSYTDPYWTKDGVSLGGSVYWNEFDAN--- 502
              + QNNFLGTGN A + L+ + Y    N+ +TDPY+T+DGVSLG + ++N+ D N   
Sbjct: 441 GGSITQNNFLGTGNSASLGLTRSSYQSKYNIGFTDPYFTRDGVSLGYNAFYNKTDYNKYY 500

Query: 503 EANLERYKNSSYGVALNSGFPINEYNRINGGIGYRHNTISEISAYEQALRFYNIYRDDDP 562
           +  +  Y  +SYG+  + G+PINE +R++ G+  +H++I E   Y     +  I R+   
Sbjct: 501 DDGVSYYAINSYGLGASLGYPINETSRLSFGLTAQHDSI-EPGTYSADEIYDFIEREGK- 558

Query: 563 NADLSFDNFELSLGWYRSTLNRGTFPTDGSSQRLSGKMTVPASDLQYFKTDFDTNYYFPI 622
                F NF+ +LGW  STLN+G   T G +Q L+  +TVP SDL ++K D+    + P+
Sbjct: 559 ----QFTNFKANLGWSESTLNKGVLATRGHAQNLNLTVTVPGSDLSFYKIDYTGQTFLPV 614

Query: 623 NRSQSFVLLARGRLGYGNGYGQYNDNDQILPFWENYYSGGSSSLRGFKSNSVGPRSFYLF 682
             S +  L    +LGYGNGYG  +     LPF+E+Y +GG  ++RGF+S ++GPR     
Sbjct: 615 --SNNTALRLHTKLGYGNGYGSTDG----LPFYESYTAGGEGTVRGFESGTLGPR----- 663

Query: 683 RGSEPCSPDPSGDGCSLPGDPNKIQVSSGRSIGGNAIATASLELIVPTPFLDEAYTNSVR 742
             S P +   +  G +   D +        ++GGN + T   E + P PF+ +    SVR
Sbjct: 664 --STPATGTYASAGQAYYSDRDT------EALGGNILITGGAEYLFPVPFIKD--NKSVR 713

Query: 743 TSFFVDAGNVWDTEFDYAKYQTLPAEEFDKLQDYSDPARIRASWGVSLQWLSPMGPMVFS 802
           TS F D G+V+  +   +  Q              D +++ +S GV + W SP+GP+  +
Sbjct: 714 TSLFWDVGSVYSDKCYLSTTQGCGG---------VDLSQMASSVGVGVTWYSPLGPLSVN 764

Query: 803 LAWPVKEYEGDQTEIFSFNIGKTF 826
           LA+P++  E    ++F F++G+TF
Sbjct: 765 LAYPIRTPENADKQVFQFSMGQTF 788