Pairwise Alignments

Query, 826 a.a., bacterial surface antigen (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 633 a.a., Outer membrane component of TAM transport system from Sphingobium sp. HT1-2

 Score = 72.8 bits (177), Expect = 6e-17
 Identities = 134/628 (21%), Positives = 225/628 (35%), Gaps = 121/628 (19%)

Query: 222 QKLQADLETIKTYYHNKGYIRFEVTSTQVAMTPDRKGLYITINVNEGEKYKVKDVNLTG- 280
           ++++ D + +       GY    V  +          L +  +V  G  Y +  V + G 
Sbjct: 104 RRVKEDSDLLDRLLRADGYYAARVRGSVAPPPAGSDKLSVIFDVTPGPLYVLDTVEIAGL 163

Query: 281 -DLMGREELMKSILPIKAGDMYNGGDVTFAEEMYSKYLGRFGYAYPEVKTYPE--IDDKT 337
            +   REE ++    +K+GD  N   +   +   +  LG  GY +  V   PE  ID + 
Sbjct: 164 AETGPREETLRGAFTMKSGDPINADRILAGQTALATALGENGYPFARVDE-PEVRIDHEA 222

Query: 338 KEVTLNINIKPGKRVYVRSINFTGNTVTEDEVMRRELRQMEGAWLNSAQVEQSKARLNRL 397
           +   L+I + PG       I    + V     ++R  R   G    +  VE  +  +   
Sbjct: 223 RNGDLDIIVTPGGYRSFGQILLDNDDVFSARHLQRMARFEPGETYRATDVEDLRRAIVTT 282

Query: 398 GFFETVDTETIQVPGTDDLVDVAVKVKEQPSGSFNAGVGYGTESGLSLQFGVQQNNFL-- 455
           G   +V T T +  G  + VD+ V ++  P  +    +GYGT  G   +   Q  N    
Sbjct: 283 GLVSSV-TLTPKDAGDGEHVDLDVDLRPAPMRTIAGELGYGTGEGYRAEVSWQHRNLFPP 341

Query: 456 -GTGNQAGVSLSTNKYSKNVNLSYTDPYWTKDGVSLGGSVYWNEFDANEANLERYKNSSY 514
            G+    GV L T + +        + +  +D V  G   Y        +N+ R    + 
Sbjct: 342 EGSLTLRGV-LGTQEQTAQATYRRNN-FRERDHVLTGLVSY--------SNIRRDAYDAR 391

Query: 515 GVALNSGFPINEYNRINGGIGYRHNTISEISAYEQALRFYNIYRDDDPNADLSFDNFELS 574
            + L+ G            I ++ + +  + A                   ++ D  +  
Sbjct: 392 TITLSGGL------ERQTNILFQKHWVWRVGA-----------------ELIASDEADAF 428

Query: 575 LGWYRSTLNRGTFPT----DGSSQ------------RLSGKMTVPASDLQYFKTDFDTNY 618
            G  R T   G  P     DGS              RLS +++   S   Y K   D + 
Sbjct: 429 SGGSRRTFLIGAVPLSLTYDGSDDLLNPSKGFRLGGRLSPELSFQGSTFGYAKAQVDASA 488

Query: 619 YFPINRSQSFVLLARGRLGYGNGYGQYNDNDQILPFWENYYSGGSSSLRGFKSNSVGPRS 678
           Y PIN     VL  R RLG   G    +  D+I P    +Y+GG +S+RG+   ++GPR 
Sbjct: 489 YQPIN--DRVVLAGRTRLGTILG----STVDRIAPS-RRFYAGGGASVRGYGYQAIGPR- 540

Query: 679 FYLFRGSEPCSPDPSGDGCSLPGDPNKIQVSSGRSIGGNAIATASLELIVPTPFLDEAYT 738
                      PD          DP          +GG ++   S E  +          
Sbjct: 541 ---------YGPD---------DDP----------VGGKSLIEFSAEARI--------RF 564

Query: 739 NSVRTSFFVDAGNVWDTEFDYAKYQTLPAEEFDKLQDYSDPARIRASWGVSLQWLSPMGP 798
            +     F+DAGN+  T         LP     + +D      +R   G+ +++ S  GP
Sbjct: 565 GNFGVVPFLDAGNISTT--------FLP-----RFRD------LRVGTGLGVRYYSSFGP 605

Query: 799 MVFSLAWPVKEYEGDQTEIFSFNIGKTF 826
           +   +  P+    GD       ++G+ F
Sbjct: 606 IRVDVGTPINPQPGDAKVAVYVSLGQAF 633