Pairwise Alignments

Query, 826 a.a., bacterial surface antigen (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 787 a.a., outer membrane protein assembly factor from Pseudomonas putida KT2440

 Score =  592 bits (1527), Expect = e-173
 Identities = 329/830 (39%), Positives = 489/830 (58%), Gaps = 47/830 (5%)

Query: 1   MRLNKLFASMLFVGASFSGTVLADTFQPFEVTDIQVEGLQRVALGAALLSLPVKVGDTVD 60
           M   +L  S+L + A+ +         PF + DI+V GLQRV+ G+   +LP+ VGD  D
Sbjct: 1   MNYPRLLLSILLLKATLAQA------SPFRIADIRVNGLQRVSAGSVFGALPLNVGDQAD 54

Query: 61  QLKLQQAIKSLYASTNFENISVSHEDGVLIVKVTERPTISAVTFEGNKDIKDEQLQESLD 120
             +L  + +SL+ +  F++I +S +  VLI+ V ERP++S++  EGNK I  E L + L 
Sbjct: 55  DRRLVDSTRSLFKTGFFQDIQLSRDGNVLIINVVERPSVSSIEIEGNKAISTEDLMKGLK 114

Query: 121 GSGVKVGESLDRTMLTGIEKGLQDFYYGVGKYGAKVEAQVINLPRNRVELKFKFTESLAA 180
            SG+  GE   R  L G+   LQ  Y   G+Y A+V+A+V+  PRNRV LK K  E   A
Sbjct: 115 QSGLAEGEIFQRATLEGVRNELQRQYVAQGRYSAEVDAEVVPQPRNRVALKIKINEGTVA 174

Query: 181 EIRQINVVGNHEFTDAELIGMLELKDYVAWWDLF-GERRYQKQKLQADLETIKTYYHNKG 239
            I+ IN+VGN+ F D  L  + ELK    W   F  + +Y ++KL  DLE +++YY ++G
Sbjct: 175 AIQHINIVGNNVFDDETLGQLFELKT-TNWLSFFKNDDKYAREKLSGDLERLRSYYLDRG 233

Query: 240 YIRFEVTSTQVAMTPDRKGLYITINVNEGEKYKVKDVNLTGDLMGREELMKSILPIKAGD 299
           YI  ++ STQV++TPD+K +YIT+N+NEGEKY V+DV L+GDL   E+ +KS+L ++ G 
Sbjct: 234 YINMDIASTQVSITPDKKHVYITVNINEGEKYTVRDVKLSGDLKVPEDQVKSLLLVQPGQ 293

Query: 300 MYNGGDVTFAEEMYSKYLGRFGYAYPEVKTYPEIDDKTKEVTLNINIKPGKRVYVRSINF 359
           +++   +T   E+ ++ LG  GY +  V   P+ +D+   V +   + PGKR YV  IN+
Sbjct: 294 VFSRKVMTTTSELITRRLGNEGYTFANVNGVPQPNDQDHTVDIMFVVDPGKRAYVNRINY 353

Query: 360 TGNTVTEDEVMRRELRQMEGAWLNSAQVEQSKARLNRLGFFETVDTETIQVPGTDDLVDV 419
            GNT TEDEV+RRE+RQMEG W ++  ++QSK RL RLGFF+ V+ ET QVPGTDD VDV
Sbjct: 354 RGNTKTEDEVLRREMRQMEGGWASTYLIDQSKTRLERLGFFKEVNVETPQVPGTDDQVDV 413

Query: 420 AVKVKEQPSGSFNAGVGYGTESGLSLQFGVQQNNFLGTGNQAGVSLSTNKYSKNVNLSYT 479
              V+EQ SGS  A VG+   +GL L   + Q+NFLGTGN+  + L+ ++Y    N  + 
Sbjct: 414 NYSVEEQASGSITASVGFAQSAGLILGGSISQSNFLGTGNKVSIGLTRSEYQTKYNFGFV 473

Query: 480 DPYWTKDGVSLGGSVYWNEFDAN---EANLERYKNSSYGVALNSGFPINEYNRINGGIGY 536
           DPY+T DGVSLG ++++N  D +   +  +  Y  +SYG  ++ G+PINE +R+  G+  
Sbjct: 474 DPYFTADGVSLGYNLFYNSTDYSDYYDDGVSYYAINSYGAGVSFGYPINETSRLTYGLTL 533

Query: 537 RHNTISEISAYEQALRFYNIYRDDDPNADLSFDNFELSLGWYRSTLNRGTFPTDGSSQRL 596
           +H+ IS    Y     +  I R+       SF+N + S+GW  STLN+G   T G SQ L
Sbjct: 534 QHDDISP-GTYSADEIYDFISREGK-----SFNNLKASIGWSESTLNKGVLATRGHSQSL 587

Query: 597 SGKMTVPASDLQYFKTDFDTNYYFPINRSQSFVLLARGRLGYGNGYGQYNDNDQILPFWE 656
           +   T P SDL ++K D++   + P+  + +  L     LGYGNGYG  +     LPF+E
Sbjct: 588 TLMATTPGSDLSFYKLDYNGQAFLPV--TSNTTLRLHTNLGYGNGYGSTDG----LPFYE 641

Query: 657 NYYSGGSSSLRGFKSNSVGPRSFYLFRGSEPCSPDPSGDGCSLPGDPNKIQVSSGRSIGG 716
           +Y +GG  S+RGFK  ++GPR       S P +   S  G +   D +         +GG
Sbjct: 642 SYNAGGQGSVRGFKDGTLGPR-------STPATGAYSNAGQAYYSDRDT------DVLGG 688

Query: 717 NAIATASLELIVPTPFLDEAYTNSVRTSFFVDAGNVWDTEFDYAKYQTLPAEEFDKLQDY 776
           N + T   E + P PF+ +   + +R+S FVDAGNV+      +  Q   +         
Sbjct: 689 NILITGGAEYLFPLPFVKD--QSQLRSSVFVDAGNVYADTCYLSTTQGCGS--------- 737

Query: 777 SDPARIRASWGVSLQWLSPMGPMVFSLAWPVKEYEGDQTEIFSFNIGKTF 826
            D A++  S GV + W SPMGP+ FSLA P+K+ +  +T++F F++G+TF
Sbjct: 738 VDLAQMAVSLGVGVTWYSPMGPLSFSLAAPLKKPDNAETQVFQFSLGQTF 787