Pairwise Alignments

Query, 826 a.a., bacterial surface antigen (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 786 a.a., outer membrane protein assembly factor from Pseudomonas putida KT2440

 Score =  588 bits (1515), Expect = e-172
 Identities = 326/820 (39%), Positives = 491/820 (59%), Gaps = 41/820 (5%)

Query: 11  LFVGASFSGTVLADTF-QPFEVTDIQVEGLQRVALGAALLSLPVKVGDTVDQLKLQQAIK 69
           L + A  S  ++A+   + F ++DI+V GLQRV+ G+   +LP+ VGD  D  +L  + +
Sbjct: 4   LLLTAVMSALMIAEVHAESFTISDIRVNGLQRVSAGSVFGALPLNVGDQADDRRLVDSTR 63

Query: 70  SLYASTNFENISVSHEDGVLIVKVTERPTISAVTFEGNKDIKDEQLQESLDGSGVKVGES 129
           SL+ +  F++I +S +  VLI+ V ERP++S++  EGNK I  E L + L  SG+  GE 
Sbjct: 64  SLFKTGFFQDIQLSRDGNVLIINVVERPSVSSIEIEGNKAISTEDLMKGLKQSGLAEGEI 123

Query: 130 LDRTMLTGIEKGLQDFYYGVGKYGAKVEAQVINLPRNRVELKFKFTESLAAEIRQINVVG 189
             R  L G+   LQ  Y   G+Y A+V+A+V+  PRNRV LK K  E   A I+ IN+VG
Sbjct: 124 FQRATLEGVRNELQRQYVAQGRYSAEVDAEVVPQPRNRVALKIKINEGTVAAIQHINIVG 183

Query: 190 NHEFTDAELIGMLELKDYVAWWDLF-GERRYQKQKLQADLETIKTYYHNKGYIRFEVTST 248
           N+ F D  L  + ELK    W   F  + +Y ++KL  DLE +++YY ++GYI  ++ ST
Sbjct: 184 NNVFDDETLGQLFELKT-TNWLSFFKNDDKYAREKLSGDLERLRSYYLDRGYINMDIAST 242

Query: 249 QVAMTPDRKGLYITINVNEGEKYKVKDVNLTGDLMGREELMKSILPIKAGDMYNGGDVTF 308
           QV++TPD+K +YIT+N+NEGEKY V+DV L+GDL   E+ +KS+L ++ G +++   +T 
Sbjct: 243 QVSITPDKKHVYITVNINEGEKYTVRDVKLSGDLKVPEDQVKSLLLVQPGQVFSRKVMTT 302

Query: 309 AEEMYSKYLGRFGYAYPEVKTYPEIDDKTKEVTLNINIKPGKRVYVRSINFTGNTVTEDE 368
             E+ ++ LG  GY +  V   P+ +D+   V +   + PGKR YV  IN+ GNT TEDE
Sbjct: 303 TSELITRRLGNEGYTFANVNGVPQPNDQDHTVDIMFVVDPGKRAYVNRINYRGNTKTEDE 362

Query: 369 VMRRELRQMEGAWLNSAQVEQSKARLNRLGFFETVDTETIQVPGTDDLVDVAVKVKEQPS 428
           V+RRE+RQMEG W ++  ++QSK RL RLGFF+ V+ ET QVPGTDD VDV   V+EQ S
Sbjct: 363 VLRREMRQMEGGWASTYLIDQSKTRLERLGFFKEVNVETPQVPGTDDQVDVNYSVEEQAS 422

Query: 429 GSFNAGVGYGTESGLSLQFGVQQNNFLGTGNQAGVSLSTNKYSKNVNLSYTDPYWTKDGV 488
           GS  A VG+   +GL L   + Q+NFLGTGN+  + L+ ++Y    N  + DPY+T DGV
Sbjct: 423 GSITASVGFAQSAGLILGGSISQSNFLGTGNKVSIGLTRSEYQTRYNFGFVDPYFTADGV 482

Query: 489 SLGGSVYW--NEFDANEANLERYKNSSYGVALNSGFPINEYNRINGGIGYRHNTISEISA 546
           SLG + ++   ++D  + ++  Y   SYG  ++ G+PI+E +R+  G+  + + I +   
Sbjct: 483 SLGYNAFYRSTDYDDLDVDVASYAVDSYGAGVSLGYPISETSRLTYGLSVQQDKI-KTGK 541

Query: 547 YEQALRFYNIYRDDDPNADLSFDNFELSLGWYRSTLNRGTFPTDGSSQRLSGKMTVPASD 606
           Y     F  +  + D     +F NF+ S+GW  STLN+G   T G SQ L+ + TVP SD
Sbjct: 542 YTVDEIFDFLEEEGD-----NFLNFKASIGWSESTLNKGVLATRGHSQSLTLESTVPGSD 596

Query: 607 LQYFKTDFDTNYYFPINRSQSFVLLARGRLGYGNGYGQYNDNDQILPFWENYYSGGSSSL 666
           L +FK D+    + PI  +  + L     LGYG+GYG  +     LPF+ENY++GG +S+
Sbjct: 597 LSFFKLDYRGQLFKPI--TSDYTLRLHTELGYGDGYGSTSG----LPFYENYFAGGFNSV 650

Query: 667 RGFKSNSVGPRSFYLFRGSEPCSPDPSGDGCSLPGDPNKIQVSSGRSIGGNAIATASLEL 726
           RGFK +S+GPR       S P   + +G       DP++  +      GGN +     EL
Sbjct: 651 RGFKDSSLGPR-------STPSIGEAAGGKPGTIADPDQDPL----PFGGNVLVQGGAEL 699

Query: 727 IVPTPFLDEAYTNSVRTSFFVDAGNVWDTEFDYAKYQTLPAEEFDKLQDYSDPARIRASW 786
           + P PF+ +    S+RTS F D GNV+DT             + +K+  +S  A   +S 
Sbjct: 700 LFPLPFVKD--QRSLRTSVFWDVGNVFDTNCG-------NKPDCEKV-GFSGMA---SSV 746

Query: 787 GVSLQWLSPMGPMVFSLAWPVKEYEGDQTEIFSFNIGKTF 826
           G+ + W++ +GP+ FSLA PVK+ +   T++F F++G+TF
Sbjct: 747 GLGVTWITALGPLSFSLAMPVKKPDDADTQVFQFSLGQTF 786