Pairwise Alignments

Query, 826 a.a., bacterial surface antigen (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 618 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 39.3 bits (90), Expect = 7e-07
 Identities = 39/203 (19%), Positives = 76/203 (37%), Gaps = 11/203 (5%)

Query: 132 RTMLTGIEKGLQDFYYGVGKYGAKVEAQVINLPRNRVELKFKFTESLAAEIRQINVVGNH 191
           R  L  +E  +      +G Y  +VE  ++   +   EL          +I+ +++  + 
Sbjct: 64  RAFLFNVEDNVTTALQSMGYYHGEVEDHLVEKDKGPWELTLTVKAGEPVKIQWVDINFSG 123

Query: 192 EFTDAELIGMLELKDYVAWWDLFGERRYQKQKLQADLETIKTYYHNKGYIRFEVTSTQVA 251
           E  D            +   D      Y   K Q     + T    +GY   E T +Q+ 
Sbjct: 124 EMLDDRAFDKWLADVNIKPGDTLNHGMYSDVKSQ-----LVTLALARGYFDGEFTESQIK 178

Query: 252 MTPDRKGLYITINVNEGEKYKVKDVNLTGDLMGREELMKSILPIKAGDMYNGGDVTFAEE 311
           +  D     I+++ N G +Y    V+  G  +   +++  ++P K    Y+    T    
Sbjct: 179 INRDLNTAQISLHFNSGARYHFGQVSFEGHTL-EPDILTKLIPFKEDASYS----TRRVS 233

Query: 312 MYSKYLGRFGYAYPEVKTYPEID 334
             ++ L   GY +  +K  P++D
Sbjct: 234 ALNRQLLDTGY-FSNIKVIPQLD 255



 Score = 36.6 bits (83), Expect = 4e-06
 Identities = 39/163 (23%), Positives = 62/163 (38%), Gaps = 51/163 (31%)

Query: 647 DNDQILPFWENYYSGGSSSLRGFKSNSVGPRSFYLFRGSEPCSPDPSGDGCSLPGDPNKI 706
           D   ++P    Y++GG  ++RG+    +GP   YL             D     G+ N+ 
Sbjct: 489 DELALIPPSLRYFAGGDQTIRGYGYQELGP---YL-------------DYIDADGNVNR- 531

Query: 707 QVSSGRSIGGNAIATASLELIVPTPFLDEAYTNSVRTSFFVDAGNVWDTEFDYAKYQTLP 766
                  IGG  +   S+E            T + R + FVDAGN +D            
Sbjct: 532 -----EVIGGRYLMVGSVE-------YQYYVTPTWRVATFVDAGNAFDN----------- 568

Query: 767 AEEFDKLQDYSDPARIRASWGVSLQWLSPMGPMVFSLAWPVKE 809
             +F+ +           S G  + W+SP+GP+   L   +KE
Sbjct: 569 -NQFEPV----------VSVGGGIHWISPIGPIKLDLGVGLKE 600