Pairwise Alignments

Query, 826 a.a., bacterial surface antigen (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 834 a.a., Outer membrane protein assembly factor BamA from Acinetobacter radioresistens SK82

 Score =  498 bits (1281), Expect = e-145
 Identities = 291/870 (33%), Positives = 468/870 (53%), Gaps = 80/870 (9%)

Query: 1   MRLNKLFASMLFVGASFSGTVLADTFQPFEVTDIQVEGLQRVALGAALLSLPVKVGDTVD 60
           MR   LF  +  V A  +          F   DI+++GL R++  +    LP+  GD VD
Sbjct: 1   MRHTHLFMPLALVSA-MAAVQQVYAADEFIARDIKIQGLVRLSPASVSTMLPINSGDRVD 59

Query: 61  QLKLQQAIKSLYASTNFENISVSHEDGVLIVKVTERPTISAVTFEGNKDIKDEQLQESLD 120
              +  A+++LYA+  F++I  S E+ +L+  V ERP IS V F+GNK I  E L++ L 
Sbjct: 60  DAAISNAVRALYATGLFDDIKASKENDILVFNVVERPIISKVEFQGNKLIPKEALEDGLK 119

Query: 121 GSGVKVGESLDRTMLTGIEKGLQDFYYGVGKYGAKVEAQVINLPRNRVELKFKFTESLAA 180
             GV  GE   ++ +  IE  L+  Y   G+Y A V  Q I  P NRV+LK +F E  AA
Sbjct: 120 RMGVAEGEVFKKSAIQTIETELEQQYTQQGRYDADVRVQTIARPNNRVDLKLEFVEGTAA 179

Query: 181 EIRQINVVGNHEFTDAELIGMLELKDYVAWWDLFGER-RYQKQKLQADLETIKTYYHNKG 239
           ++  IN++GN  F + E+  +  +++  +W  +     RY ++K+ A LE ++  Y N+G
Sbjct: 180 KVVDINIIGNTVFKEDEIKQVFAVRES-SWSSIVTRNDRYAREKMAASLEALRALYLNRG 238

Query: 240 YIRFEVTSTQVAMTPDRKGLYITINVNEGEKYKVKDVNLTGDLMGREELMKSILPIKAGD 299
           YI F++ ++ + ++ D+K ++I ++V+EGE++K       GD +   + +K++   K GD
Sbjct: 239 YINFKINNSNLNLSEDKKHIFIEVSVDEGEQFKFGQTKFLGDALYSPDELKALKIYKDGD 298

Query: 300 MYNGGDVTFAEEMYSKYLGRFGYAYPEVKTYPEIDDKTKEVTLNINIKPGKRVYVRSINF 359
            Y+   V   +++  +  G  GY + EV   P+I+++T  V LN  I PG++V VR INF
Sbjct: 299 TYSQEKVDAVKQLLLRKYGNAGYYFAEVNVAPQINNETGIVDLNYYINPGQQVTVRRINF 358

Query: 360 TGNTVTEDEVMRRELRQMEGAWLNSAQVEQSKARLNRLGFFETVDTETIQVPGTDDLVDV 419
           +GN+ T DEV+RRE+RQMEGA  ++ +++ SK RL R GFFE V  +  ++PG  D +D+
Sbjct: 359 SGNSKTADEVLRREMRQMEGALASNEKIDLSKVRLERTGFFENVTIKPARIPGAPDQIDL 418

Query: 420 AVKVKEQPSGSFNAGVGYGTESGLSLQFGVQQNNFLGTGNQAGVSLSTNKYSKNVNLSYT 479
            V VKEQ SG+    VGY    G++ Q G+ Q NFLGTGN+  + LS ++     NLS T
Sbjct: 419 NVDVKEQHSGTSTLAVGYSQSGGITFQAGLSQTNFLGTGNRVSIDLSRSETQDYYNLSVT 478

Query: 480 DPYWTKDGVSLGGSVYWNEFDANEA-NLERYKNSSYGVALNSGFPINEYNRINGGIGYRH 538
           DPY+T DGVS G ++Y+ +   ++  N+  Y   SYG +L+ G+PI+E   ++  +   +
Sbjct: 479 DPYFTIDGVSRGYNLYYRKTKLDDDYNVNNYVTDSYGGSLSFGYPIDENQNLSASLNIDN 538

Query: 539 NTISE---ISAY-------------------------EQALRFYNIYRDD--DPNADL-- 566
             ++    +S Y                         ++A   YN       DP  +   
Sbjct: 539 TEVTTGPYVSTYVRDYLLANGGKTLDTTQYCLVDRVKDEATGAYNCPEGQLSDPYGNKFG 598

Query: 567 -SFDNFELSLGWYRSTLNRGTFPTDGSSQRLSGKMTVPASDLQYFKTDFDTNYYFPINRS 625
             F  + L+LGW  +TLNR  FPT+G S R++ ++ +P SD++Y K  +D   +FP+ + 
Sbjct: 599 GEFLTYNLNLGWSYNTLNRPVFPTNGMSHRINAEIALPGSDVEYQKLTYDAQAFFPLGK- 657

Query: 626 QSFVLLARGRLGYGNGYGQYNDNDQILPFWENYYSGGSSSLRGFKSNSVGPRSFYLFRGS 685
             F L   G+LGYGN           LPF++N+Y+GG  S+RG+  +++GP+        
Sbjct: 658 -DFTLRTYGKLGYGND----------LPFYKNFYAGGYGSVRGYDVSTLGPK-------- 698

Query: 686 EPCSPDPSGDGCSLPG---DPNKIQVSSGRSIGGNAIATASLELIVPTPFLDEAYTNSVR 742
                         PG      K++  S   +GGNA+     EL +P PF  + +T  VR
Sbjct: 699 -------------YPGVTYSETKVEDPSPEEVGGNALVQFGTELALPLPFKGD-WTRQVR 744

Query: 743 TSFFVDAGNVWDTEFD------YAKYQTLPAEEFDKLQDYSDPARIRASWGVSLQWLSPM 796
              F +   V+DT+ D      + K Q+L ++++ +     D   +R S GV   W++ +
Sbjct: 745 PVIFAEGAQVFDTQCDVSNSTIFYKGQSLDSKKYCEDNFGFDLGEMRYSVGVGFTWITMI 804

Query: 797 GPMVFSLAWPVKEYEGDQTEIFSFNIGKTF 826
           GP+  S A+P+ + EGD+T+   F IG+TF
Sbjct: 805 GPISLSYAYPLNDKEGDETQAVQFEIGRTF 834