Pairwise Alignments

Query, 486 a.a., NOL1/NOP2/sun family putative RNA methylase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 429 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  121 bits (303), Expect = 5e-32
 Identities = 85/288 (29%), Positives = 138/288 (47%), Gaps = 30/288 (10%)

Query: 207 NLIEAMSSRPPIWGRAQSINSQTA--VSQLQALGIEASLSPFFEDAINLGSKSMNLNEIT 264
           ++IEA + RPP+W R    +      +  L+  G++    P + DA+ L + +  ++ + 
Sbjct: 163 HIIEANNQRPPMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAP-VHALP 221

Query: 265 LYKEGNIEIQDLASQVIGQICAPEPWQHWWDACSGAGGKTLQLRSLMQTAATKQHTPLQG 324
            + EG + +QD ++Q      AP+  +H  D C+  GGKT  +  +   A          
Sbjct: 222 GFAEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEA---------- 271

Query: 325 SIVSSDIRANAL-------EELSKRAQRAQFDGISIARWRSDALPVAANYFDGVLVDAPC 377
            +++ DI    L       + L  +A   Q DG   ++W  +        FD +L+DAPC
Sbjct: 272 DVLAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGE------QQFDRILLDAPC 325

Query: 378 SCTGTWRRNPDMRWLDTLDAVMDKATLQLDILSRSSQAVKAGGTLIYATCSLSPVENEEV 437
           S TG  RR+PD++WL     + + A LQ +IL      +K GGTL+YATCS+ P EN + 
Sbjct: 326 SATGVIRRHPDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQ 385

Query: 438 VSAFLQQHPEFNLVPIRHPFTGEQTEMLTVWPFEANTDGMFVARMQRK 485
           +  FLQ+ P+  L     P    Q  +    P     DG F A++ +K
Sbjct: 386 IKTFLQRTPDAALSETGTPDQPGQQNL----PGGEEGDGFFYAKLIKK 429