Pairwise Alignments

Query, 252 a.a., ISSod6, transposase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 270 a.a., IS5 family transposase from Paraburkholderia sabiae LMG 24235

 Score = 64.3 bits (155), Expect = 2e-15
 Identities = 51/235 (21%), Positives = 105/235 (44%), Gaps = 23/235 (9%)

Query: 27  KPEHRQTFEGILYRLRTGIPWRDLPKEFGHWSTVFRRFHLWSKKGVLAHLFKALANLADI 86
           K E R+ F  + + +R G PWR +P  F  W  V+++   W + G   ++   L ++  +
Sbjct: 36  KYELREMFNALRWIVRAGAPWRMMPNNFPAWEMVYQQTQRWLQAGCFENMVCDLRSIIRV 95

Query: 87  --------EWVFIDGSIVRAHQHSAGAATLSNESIGKSRGGNSTKIHLAVDSGGLPIYFE 138
                     V +DG  +++   S   A    +   + RG   +K+H+AVD+ G  +   
Sbjct: 96  AQGRQGQPSAVILDGRTMQSTCESGPRA--GYDGYKRKRG---SKVHIAVDTLGHLLAVH 150

Query: 139 LSEGQKHDITHAPSLIEHLKQV--DTV---IADKGYDSDAFRELIANKGGKSVIPRRRYK 193
           ++   + +      L   ++ V  +TV    AD+GY  +       N+G +  + + +  
Sbjct: 151 VTPANEQERAQVGELARQVQDVTGETVKVAFADQGYTGEDAAHAARNEGIELQVIKLQ-- 208

Query: 194 NTPQERVDWCLYRYRHLVENAFGRIKHYRAISTRYDKLARNYASMVSLAFMLMWL 248
              + +  + L   R +VE +FG +  +R ++  Y++L    A +  + F ++ L
Sbjct: 209 ---EAKKGFVLLPRRWVVERSFGWLNRFRRLARDYERLPETLAGLHFVVFAMLML 260