Pairwise Alignments

Query, 321 a.a., outer membrane porin, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 376 a.a., porin from Paraburkholderia sabiae LMG 24235

 Score = 58.2 bits (139), Expect = 3e-13
 Identities = 86/346 (24%), Positives = 140/346 (40%), Gaps = 61/346 (17%)

Query: 6   KTLLASALASATLASAYAAEPLTVYGKLN--VTAQSNDENGDATTTIQSNAS--RFGVKG 61
           +  L+ A+ +AT  +A+A   +T+YG ++  +T  +ND    + +    N S  R+G+KG
Sbjct: 6   RMFLSLAMLAAT-GAAHADNSVTLYGIVDTGLTWVNNDGGHKSISMTSGNQSGNRWGLKG 64

Query: 62  DFELSSSLSAFYTVEYQVDT---GAASSDNFTARNQFVGLKGD-FGSFSVGRNDTLLKIS 117
             +L   L   +T+E   D+             R  FVGL GD +G+ +VGR    L   
Sbjct: 65  AEDLGGGLKTIFTLESGFDSTNGKMGQGSRLFGRQAFVGLSGDRWGTLTVGRQYDPL--- 121

Query: 118 QGDVDQFNDLSGD--LGKLF---------KGEVRAAQTATYLTPSFGDFVF--------- 157
              VD    + GD  LG +F             R      Y +PS   F F         
Sbjct: 122 ---VDLVQPVQGDNFLGGVFISPGDIDNADNSARVNNAIKYTSPSLSGFQFSALYSLGGV 178

Query: 158 -GVTYVAEGNDVKSQFAQDGFSVAAMY-----GDAKLKKTAVYAALAYDSDVSGYEVLRA 211
            G T   +   V + ++    +VAA Y     G+A  + T  + +L      + Y    A
Sbjct: 179 AGATGSGQSYAVAAAYSNGPLNVAAGYYHFNNGNAANRGTTTWDSLFSTPVNAAYATASA 238

Query: 212 SLQAKLAG------IKLGGMYQQQEQTYKLDKTTSLPVEVTAESATGYLLSAAYDINA-V 264
               +  G      + LGG Y   E  Y  D  ++        + + Y   A + ++A +
Sbjct: 239 INNVRFGGNYLVGPVTLGGYYSHAE--YTADGRSAFANTQKYNTGSVY---AVWQVSAPL 293

Query: 265 TLKAQFQDMEDLGDS------WSVGADYNLGKPTKVFAF--YTNRS 302
             +  +  M+  G+S      ++  ADY L K T V+A+  YT  S
Sbjct: 294 QTQIGYVYMKSSGNSSAKYHQFAAAADYALSKRTDVYAWAAYTTAS 339