Pairwise Alignments

Query, 321 a.a., outer membrane porin, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 329 a.a., Outer membrane protein (porin) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 97.1 bits (240), Expect = 5e-25
 Identities = 95/343 (27%), Positives = 148/343 (43%), Gaps = 49/343 (14%)

Query: 8   LLASALASATLASAYAAEPLTVYGKLNVTAQSNDENGDATTTIQSNASRFGVKGDFELSS 67
           L  + LA     +A+A   +T+YG++N T +  D  G  TT + +N SRFG KG  +L  
Sbjct: 7   LALAVLALLGSTAAFAQSSVTLYGRVNTTVERQDMGGVKTTVMANNNSRFGFKGVEDLGG 66

Query: 68  SLSAFYTVE--YQVDTGAASSDNFTARNQFVGLKGDFGSFSVGRNDTLLKISQGD-VDQF 124
            L+A + +E  +Q DTG  S   F  R+  V L G FG+  +G        +  D V   
Sbjct: 67  GLTAGFQLESGFQSDTGVGSGALF-GRHSEVNLSGGFGTVRLGNFFPASYYASADYVSMH 125

Query: 125 NDLSGD------LGKLFKGEVRAAQTATYLTPSFGDFVFGVTYVAEGNDVKSQFA----- 173
           N  +G          ++ G         Y TP+ G F       AEG+ V  + A     
Sbjct: 126 NHDTGSSSDALYYDPVWFGGPGTGNKIAYRTPNIGGF------TAEGSVVLHEQAPGTGG 179

Query: 174 QDGFSVAAMYGDAKLKKTAVYAALAYDSDVSGYEVLRASLQAKLAGIKLGGMYQQQEQTY 233
           ++G+  AA Y    L   A Y+A+  +   S    LRA          +GG YQ+ +   
Sbjct: 180 KNGYDFAANYAMGALDLGAGYSAIDSNKQFS----LRALY--SFGQFTVGGYYQRNKDAN 233

Query: 234 KLDKTTSLPVEVTAESATGYLLSAAYDINAVTLK---AQFQDMEDLGDS----WSVGADY 286
           +L       +   A +     L+AAY + A        +  + E++ DS    +++G +Y
Sbjct: 234 QL-------LATGAGTRNNLRLAAAYSVGASEFHVNVGRAGEYENIADSDATQYTLGYNY 286

Query: 287 NLGKPTKVFAFYTNRSLEANTD--------DDKYIAIGLEHKF 321
           NL K TKV+ +YT  +   N          D   +A+G+ H F
Sbjct: 287 NLSKRTKVYGYYTRVNNSTNATYMTGTAGVDFSSVAVGIRHNF 329