Pairwise Alignments

Query, 321 a.a., outer membrane porin, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 359 a.a., porin from Dickeya dianthicola 67-19

 Score = 58.2 bits (139), Expect = 3e-13
 Identities = 54/201 (26%), Positives = 83/201 (41%), Gaps = 24/201 (11%)

Query: 1   MNVFCKTLLASALASATLASAYAAE--PLTVYGKLNVTAQSNDE------NGDATTTIQS 52
           +NV   ++L  +    + A  Y  E   L +YGK+       D+      NGDAT     
Sbjct: 5   INVLSTSVLLFSTGLVSAAEVYNKEGNKLDLYGKVRSAYYFGDKTNSFKGNGDATY---- 60

Query: 53  NASRFGVKGDFELSSSLSAFYTVEYQVDTGAASSDNFT---ARNQFVGLK-GDFGSFSVG 108
             +R GV+G+ +L++ ++ +   EY  D   A   N      R  + GLK   FGS   G
Sbjct: 61  --ARLGVRGETQLAADITGYGNYEYHFDASKAEDTNAVNGKTRYAYTGLKFYKFGSIDYG 118

Query: 109 RNDTLLKISQGDVDQFNDLSGDLGKLFKGEVRAAQTATYLTPSFGDFV----FGVTYVAE 164
           RN  +        D   +  GD         R A  ATY    F   V     G+ Y ++
Sbjct: 119 RNKGIAYDGLSYTDVLPEFGGDQSSTDSITGRTAGVATYRNKDFFGLVDGWSIGLQYQSK 178

Query: 165 GNDVKSQFAQ--DGFSVAAMY 183
            ND ++   Q  +GF +++ Y
Sbjct: 179 HNDSRNAALQTGNGFGISSAY 199