Pairwise Alignments

Query, 518 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 345 a.a., GAF domain/GGDEF domain protein from Pseudomonas putida KT2440

 Score =  117 bits (294), Expect = 5e-31
 Identities = 74/206 (35%), Positives = 105/206 (50%), Gaps = 4/206 (1%)

Query: 313 RKETLEQREQALLRKSMETMRK---ELNELSNEANTYKERLFEQQKLNLLDSLTQLPNRA 369
           R   L   +QA  R  + T+ +   +L  L+   +  +  +   Q+  LLD LTQL NR 
Sbjct: 135 RPRKLSDAQQANFR-DLATLTEGYLQLRSLAQVNHALRVEMDRGQRRALLDPLTQLWNRG 193

Query: 370 ALEERMELEYRNYQRHKSPLWIAVADIDHFKIINDSFGHSTGDKTLQVIAMALKNSLRDT 429
           AL      E R  +     L    AD+D FK +ND  GH  GDK L   A  L+ +LR  
Sbjct: 194 ALAAFQNRELRLAEERGLQLGAVYADLDRFKSVNDEHGHDAGDKVLCECARRLRATLRPD 253

Query: 430 EFVARYGGEEFVLILPDIDDSDIAQLLNRVREKVKNIPFKFKNQRITVTVSIGAARVMGN 489
           + + R GGEEFV +L   D  ++AQ+  R+R+ + + PF        +T+SIG A +   
Sbjct: 254 DLLVRQGGEEFVALLRVKDSQELAQIAERLRQSIGSAPFLLPGGPRKMTMSIGCALLTQG 313

Query: 490 ELIHETFERADAALYKAKHESRDRVV 515
           E I +  +RAD  LY AKH  RD+VV
Sbjct: 314 EQIDDAIKRADGGLYAAKHGGRDQVV 339