Pairwise Alignments

Query, 518 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 645 a.a., GGDEF domain protein from Pseudomonas putida KT2440

 Score =  181 bits (458), Expect = 9e-50
 Identities = 109/349 (31%), Positives = 187/349 (53%), Gaps = 6/349 (1%)

Query: 171 VLPKHRQLAHELAQ----MISEIEFRKDQRDQVLVIKEMLASDIEIDNLLEAYQTILSLL 226
           V P + Q+A  + Q    ++ ++   +  + Q   ++E +A  +    L+     +  L+
Sbjct: 295 VEPPYSQVAAHIEQTLIGLLDDLSLPERHKAQAQEMRERVARGLNWYELIPVLDDLAVLM 354

Query: 227 LDNIAREKSASQEFLYALNDALAAVREVVSESYNHNQRSFQLKTQLNREINSRVDNVGEA 286
           L      +   + +L  LN+ L   +  + E+   +  +     +L+ ++   VD +  +
Sbjct: 355 LAITDSGQHEFETYLQQLNERLEGFQSHLHEASAGHADNSTAARELDSQLREHVDGLQSS 414

Query: 287 IIDTDDIVDLKARLTEQLNSIRSAL-ARKETLEQREQALLRKSMETMRKELNELSNEANT 345
           +    D+  LK  L  +L  +   +   K   ++REQ L  + ++ + + +  + +EA  
Sbjct: 415 VQGAADVDSLKHILENRLEGLLVTMDEHKHERDRREQELAGR-LQGLSERVASMEHEALG 473

Query: 346 YKERLFEQQKLNLLDSLTQLPNRAALEERMELEYRNYQRHKSPLWIAVADIDHFKIINDS 405
           Y+E L EQ++  LLD LT LPNRAA  ER+E E  ++Q +   L +A+ D+DHFK IND+
Sbjct: 474 YREHLEEQRQKALLDPLTGLPNRAAWSERVEREMLDWQENGGHLAMAILDLDHFKRINDN 533

Query: 406 FGHSTGDKTLQVIAMALKNSLRDTEFVARYGGEEFVLILPDIDDSDIAQLLNRVREKVKN 465
           +GH  GDK L+++A  L+  LR  +F+AR+GGEEFV++LP    +  AQ+   +R  V+ 
Sbjct: 534 YGHLAGDKVLKIVADQLRKRLRGRDFIARFGGEEFVMLLPQTTPAVAAQVAEVLRATVEA 593

Query: 466 IPFKFKNQRITVTVSIGAARVMGNELIHETFERADAALYKAKHESRDRV 514
            PF FK +R+ +T SIG       E   +  +RADAALY+AK   R+RV
Sbjct: 594 CPFHFKGERVVITTSIGLGAFRSGERSDQVLKRADAALYRAKELGRNRV 642