Pairwise Alignments

Query, 518 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 349 a.a., GGDEF domain-containing protein from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  117 bits (293), Expect = 7e-31
 Identities = 79/233 (33%), Positives = 117/233 (50%), Gaps = 23/233 (9%)

Query: 285 EAIIDTDDIVDLKARLTEQLNSIRSALARKETLEQREQALLRKSMETMRKELNELSNEAN 344
           E + D   + DL   L+   N +R           RE A+L K +E   KE+  L     
Sbjct: 127 ETVDDPSSLKDLVGGLSTATNRVR-----------RETAILEKRLEKSNKEVIRL----- 170

Query: 345 TYKERLFEQQKLNLLDSLTQLPNRAALEERMELEYRNYQRHKSPLWIAVADIDHFKIIND 404
             +E L + ++  + D+LT L NR A +ER+E    +     +PL +A+ DIDHFK  ND
Sbjct: 171 --RENLEQVRRDAMTDALTNLANRKAFDERLEAACADDDG--APLSLAILDIDHFKRFND 226

Query: 405 SFGHSTGDKTLQVIAMALKNSLRDTEFVARYGGEEFVLILPDIDDSDIAQLLNRVREKVK 464
           ++GH TGD+ L+ ++  L N    T F AR+GGEEF +I P      +   L  +R  V 
Sbjct: 227 TWGHQTGDQVLRYVSTVLSNICGKTRFAARFGGEEFAIIFPGEGAGVVMAALESIRNDVA 286

Query: 465 NIPFKFKNQRI---TVTVSIGAARVMGNELIHETFERADAALYKAKHESRDRV 514
           +   + ++      +VTVS G A+    E      ERADAALY++K   R+ V
Sbjct: 287 SRALRRRSTNDDLGSVTVSAGFAQRRKGETAASLLERADAALYESKRAGRNCV 339