Pairwise Alignments

Query, 448 a.a., MATE efflux family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 471 a.a., MATE family efflux transporter from Dickeya dadantii 3937

 Score =  111 bits (278), Expect = 4e-29
 Identities = 115/464 (24%), Positives = 201/464 (43%), Gaps = 35/464 (7%)

Query: 1   MTAISHSATDQRLLQEPIAKLFWRYTIPTIASMLVTGVYVTIDGIFVGHYLGETGLAGMM 60
           M++   S T   LLQ  I +   +  +P I + L+   Y+  D  +VG  LG+  +A + 
Sbjct: 1   MSSELSSETSNTLLQGSILRALIKMGVPVILANLLQSGYIMTDAFWVGR-LGDKAVAAIS 59

Query: 61  LAYPVGAILYAIGAMIGMGSAALVSINLGQGNVAKARKLLGNAFSLCLLAGAFFALVGGV 120
           ++ P+  + +A+G  + +    LV+  +G      A  +    F L LL     ++VG  
Sbjct: 60  VSQPIIFLAFALGIGLSIAGTTLVAQCIGARLHQDANAIAAQVFMLSLLFSIPISVVGYF 119

Query: 121 FSRDILIALGAEGEILENANEYLFWYFALCHFPIISMAFTTLLRNDGRPSMVTFVLILGG 180
            +  +L  LG + ++   A  +L    +   F        +L+R  G   +   + +   
Sbjct: 120 LTPWMLHTLGTQEDVFPLALSFLRVLISGLVFTFGFAMLQSLMRGAGEVRIPLLITLGTL 179

Query: 181 VLNTFLDWLFI----VVFPFGLAGAAIATMLSQA---VTGLLCLQHFFGARTQLKINLEQ 233
           +LN  +D LFI    ++  FG+ GA IAT+++Q    V G L L+    +R  LKI    
Sbjct: 180 ILNAIMDPLFIFGYGIIPAFGVTGAGIATLINQGIAMVAGFLALRF---SRISLKIYFCA 236

Query: 234 MKLKLDNCINIARVGLPSFLMNLYLSIVLTLH-----NTAFLWVG-GPLHVAAYGVVSYT 287
           MK + D   ++ R+G+P+       SI L  H         L  G G    AAYGVV   
Sbjct: 237 MKPRFDMVKSVVRLGMPA-------SIELCAHALGASGMMSLVTGLGTAVTAAYGVVINI 289

Query: 288 EAFFYLIFEGIALGTQPIYSFNAGAGRFDRVKQARNIAFSMTLLT-AALGLVLIYSRPEW 346
            A   +   G+++ T  +   N GAG+F+R +    ++ +++ LT   +GL      P+ 
Sbjct: 290 NALVIVPAIGMSIATATLVGQNVGAGKFERARAIGRLSATISFLTQTMIGLTGFAFAPD- 348

Query: 347 LVYLFAGDNPSLTPVAIEGMRWYFWGLPMEGLILVGASFFQAINCSKQASILTGAKLILI 406
           ++ LFA   P  T V   G  ++    P  GLI +  +   A   + +        LI  
Sbjct: 349 IIGLFA---PEQTQVINHGTLFFHIIAPGYGLIGLQMALNGAFRATGRTMTTMTLALISQ 405

Query: 407 AAIIYCFAW------AFGVIGVWVSLATCSTMLVIWMFIAMQRL 444
             +    AW      + G+ G+W +    + ++     I  +R+
Sbjct: 406 WLVQIPLAWGLSHYTSLGISGLWWAFPITNLLMAAITIILFERI 449