Pairwise Alignments

Query, 998 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 957 a.a., diguanylate cyclase from Pseudomonas simiae WCS417

 Score =  440 bits (1132), Expect = e-127
 Identities = 234/674 (34%), Positives = 394/674 (58%), Gaps = 2/674 (0%)

Query: 319 SREQLELVLSSSDLGVWDWDIRNDHIERNTRSADILGCDIDMLNANSRQWMDSIVAEDRP 378
           S  +L + L +S+LG+WDW+++ D +  +T+  ++ G + + + A        +  +D P
Sbjct: 276 SEARLAMALQASELGLWDWNLQTDEVH-HTQLKELFGLEPEYVTAMLSHLKPRLHPDDLP 334

Query: 379 QVLQSIEAHIRGETPQHKMEYRLKTLNRDIRWILDTGKVVSRDANNNALRMCGTYTDITE 438
            + +++  H++G +  +++EYR++  +    WI D G+ V R  +    RM GT  DIT 
Sbjct: 335 LLKRALVEHLKGRSEDYQVEYRVRHGDGHWVWIEDRGRAVERAPSGRVTRMLGTRRDITA 394

Query: 439 AKLIEESLKLSALVYDNSSEAMSVLDENGVIITVNAAFTDITGYSESEIRGQHIRMMYCD 498
            K +EE  +L++ V++ +SE + +LD +  +I VN AF+ +TG+   ++ G+++  +   
Sbjct: 395 GKALEEQQRLASTVFEAASEGIVILDPDYKLIAVNQAFSRVTGFETDDMIGRNVVELPSS 454

Query: 499 LNGHEFYQQMNDDIRNKGEWQGEMRQRRRNNEEYVIWLTINTIKDKDGLPHRRVALFSDI 558
            +    +  +   + + G WQGE+ + R+N E Y  WL +N ++D  G     V  F+D+
Sbjct: 455 RDARRHFPVIRQALLSHGTWQGELVETRKNGELYPQWLQLNVVRDVRGKVSHIVGFFADL 514

Query: 559 TDKKQSEHLIWKQANYDTLTGLPNRRMLLEYLSAEIKTADRNRNHFALMFLDLDYFKEVN 618
           + +++SE  +    +YD LTGL NR +  E L    +   +   + AL+ ++LD FK +N
Sbjct: 515 SARRESEERMRYLTHYDELTGLANRSLFRERLREAHQRVRQGGRNLALLHINLDRFKLLN 574

Query: 619 DTLGHAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMADHKGIERVAEHILRR 678
           D+LGH + D LL + A RL + + +AD +ARL GDEF V+  +  +   + RVA  +L +
Sbjct: 575 DSLGHEVADQLLQKMARRLINALPEADTIARLSGDEFAVLFDAYGNLSSLARVATRLLAK 634

Query: 679 IAEPYYLGEETTHISASIGITLYPDDSPSIEGLLKHADQAMYAAKDQGRNRFNYFTPSMQ 738
           +  P  +      +SAS+G++L PD++  I  L+  ++ AM  AK  G N F ++T S+Q
Sbjct: 635 LRVPVTVEGHELVVSASMGVSLLPDNAREISALVSQSNMAMQHAKHLGGNNFQFYTDSLQ 694

Query: 739 EYAKYRMRLIHDLRQAVLNKEFELHYQPIVTMATGEVLKAEALLRWFHPERGSVSPAEFI 798
                R++L + LR+A+   +  + YQP + +ATG++  AEAL+RW HP+ G V P +FI
Sbjct: 695 ASTLERLQLENHLRKAIEEGQLTVFYQPKLCLATGKLNAAEALIRWEHPQWGMVPPGDFI 754

Query: 799 PVAEDTGLIVEIGNWVFEQAARQSAQWRKTLGVEIQISVNKSPIQFRDEGALLHNWLELL 858
            +AE+TGLIV +G +V  +A  Q+ +W++     I++SVN S  Q R +G L+    ++L
Sbjct: 755 GLAEETGLIVPLGEFVLREACWQACEWQRQGLAPIRVSVNLSVHQLR-QGKLVSLVRQVL 813

Query: 859 QQLDVTGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKFDI 918
           ++  +    + +E+TE  LLD+   +       RD GV++++DDFGTGYSSL+YLK+  +
Sbjct: 814 EETGLDPQYLELELTESQLLDSVEHIIATFQQLRDLGVKLAIDDFGTGYSSLSYLKRIPV 873

Query: 919 DYLKIDQSFTRNIDTDENDHTLCEAIIVMAHKLGMKVIAEGVETEAQRQVLLRAGCDYGQ 978
           DY+KIDQ+F R +     D  +  AII MAH L +KV+AEGVE + Q   L    CD  Q
Sbjct: 874 DYVKIDQTFIRGLGQGREDAAITRAIIAMAHGLALKVVAEGVEDQQQLDFLRGERCDEVQ 933

Query: 979 GYLFSKPVSASEFA 992
           GYL S+P+ A   A
Sbjct: 934 GYLISRPMEAKGLA 947