Pairwise Alignments

Query, 998 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1247 a.a., diguanylate cyclase from Pseudomonas simiae WCS417

 Score =  438 bits (1126), Expect = e-126
 Identities = 233/562 (41%), Positives = 343/562 (61%), Gaps = 1/562 (0%)

Query: 435  DITEAKLIEESLKLSALVYDNSSEAMSVLDENGVIITVNAAFTDITGYSESEIRGQHIRM 494
            DITE +L++E L+ +A V+++++E + + D    I  VN AF++ITGYSE+E  G   R+
Sbjct: 670  DITERQLMQEKLQQAATVFESTAEGVLITDTRQNISAVNRAFSEITGYSEAEALGNTPRL 729

Query: 495  MYCDLNGHEFYQQMNDDIRNKGEWQGEMRQRRRNNEEYVIWLTINTIKDKDGLPHRRVAL 554
            +   L+   FY  M   +  +G WQGE+  RR+N E Y  WLTI+ +++++ L    VA+
Sbjct: 730  LASGLHDSAFYAAMWHQLTAQGHWQGEISNRRKNGELYPSWLTISAVRNREQLITHFVAV 789

Query: 555  FSDITDKKQSEHLIWKQANYDTLTGLPNRRMLLEYLSAEIKTADRNRNHFALMFLDLDYF 614
            F+DI+  K ++  +  QA++D LTGLPNR +    L A +          A++FLDLD F
Sbjct: 790  FADISSLKLAQARLDYQAHHDPLTGLPNRTLFESRLQAALNGHQETGQQGAVLFLDLDRF 849

Query: 615  KEVNDTLGHAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMADHKGIERVAEH 674
            K +ND+LGH +GDLLL + A RLK  +RD D VARLGGDEF ++L  +      + +A  
Sbjct: 850  KHINDSLGHPIGDLLLKDIAVRLKEQLRDIDTVARLGGDEFIILLPGLQHASDAQYLANK 909

Query: 675  ILRRIAEPYYLGEETTHISASIGITLYPDDSPSIEGLLKHADQAMYAAKDQGRNRFNYFT 734
            +L     P+  GE    ISASIG +LYP+D   +  L+K+AD AMY +K +GRNR   +T
Sbjct: 910  LLACFTPPFQAGEHEFFISASIGTSLYPEDGTDVATLVKNADAAMYRSKAKGRNRVESYT 969

Query: 735  PSMQEYAKYRMRLIHDLRQAVLNKEFELHYQPIVTMATGEVLKAEALLRWFHPERGSVSP 794
              +   A  R+ L H+LR+A+   E  L+YQP +++AT E++ AEAL+RW HP  G V P
Sbjct: 970  RDLTAQANERVALEHELRRAIERDELSLYYQPKLSLATHELIGAEALIRWHHPTFGDVPP 1029

Query: 795  AEFIPVAEDTGLIVEIGNWVFEQAARQSAQWRKTLGVEIQISVNKSPIQFRDEGALLHNW 854
              FI +AE+ G+I++IG+WV EQA RQ   W+        +SVN +  Q R  G LL   
Sbjct: 1030 EHFIALAEENGMILQIGDWVLEQACRQMHAWQGHFDDFGPLSVNLAGAQLRHPG-LLGRI 1088

Query: 855  LELLQQLDVTGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLK 914
             +LL    +    + +EITE  ++  +    + L   +D GVQ+++DDFGTGYSSL+YLK
Sbjct: 1089 KQLLHDYQLDPGRLQLEITENFIMSQAEEALDVLHQLKDLGVQLAIDDFGTGYSSLSYLK 1148

Query: 915  KFDIDYLKIDQSFTRNIDTDENDHTLCEAIIVMAHKLGMKVIAEGVETEAQRQVLLRAGC 974
            +  +D+LKIDQSF R +  D +D  +  AII + H +   +IAEGVE  AQ+  L   GC
Sbjct: 1149 RLPLDFLKIDQSFVRGLPDDPHDAAIVRAIIALGHSMQFTIIAEGVENPAQQAFLAAEGC 1208

Query: 975  DYGQGYLFSKPVSASEFASKYL 996
            +  QGY+ S P+  + FA+ +L
Sbjct: 1209 EQMQGYIVSLPLPPALFAATFL 1230



 Score = 41.6 bits (96), Expect = 3e-07
 Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 11/121 (9%)

Query: 378 PQVLQSIEAHIRGETP---QHKMEYRLKTLNRDIRWILDTGKVVSRDANNNALRMCGTYT 434
           P  L   EA+   ET     H ++YR+ T +    W+ D   +VS   + +   + G   
Sbjct: 364 PADLTRAEAYCYRETRANRDHSIDYRVITADGRCLWVRD---IVSLIEHGHEPVLRGLMI 420

Query: 435 DITEAKLIEESLKLS----ALVYDNSSEAMSVLD-ENGVIITVNAAFTDITGYSESEIRG 489
           DI+EAK  EE+L+LS    A V+    + + +    +G ++ VN AF D  G     + G
Sbjct: 421 DISEAKRTEEALQLSEQKFASVFQQCPDMLVIARLSDGCLLEVNKAFEDQIGLKAEHVVG 480

Query: 490 Q 490
           +
Sbjct: 481 K 481