Pairwise Alignments

Query, 998 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1283 a.a., diguanylate phosphodiesterase from Pseudomonas simiae WCS417

 Score =  430 bits (1105), Expect = e-124
 Identities = 280/811 (34%), Positives = 435/811 (53%), Gaps = 37/811 (4%)

Query: 213  IDQKWIKVNPRLCQMLKYSEDELLHMT---WKQLTHPDDLDA--DVAKFEQMLAGNIDNY 267
            I Q+ I  N  L   L Y++ EL  M    W+ L HP+D +   D+ + +Q   G     
Sbjct: 473  ISQRMIFSNHHLGHTLGYNKAELQQMGEYFWEILLHPEDAEHYHDLRQ-QQRQIGYTTQL 531

Query: 268  ELDKRFIAKNGS---LVYTHMTVACKRTNHQVLLVISGYLDVTAQTLADREVLASREQLE 324
            +   RF  +N            +A  +T  Q+  +I    D+T Q  A   +  S ++  
Sbjct: 532  QCQLRFRHRNNQWRRFDIREQALARDKTT-QISRIIGVAKDITDQIEASESLRDSEQRYR 590

Query: 325  LVLSS-SD-LGVWDWDIRNDHIERNTRSADILGCDIDMLNANSRQWMDSIVAEDRP---- 378
            ++  S SD +   D  +  ++I  +  +  +LG D+D +  N  Q   SI+A  +     
Sbjct: 591  MLAESISDVICSTDSQLALNYISPSVNA--VLGYDVDWVFKNGWQ---SIIANPQQLTGI 645

Query: 379  -QVLQSIEAHIRGETPQHKMEYRLKT-------LNRDIRWI-LDTGKVVSRDANNNALRM 429
              +++ +   +      +K+   ++T       L  D R + ++   V+  D +     +
Sbjct: 646  YSLMEEVSRALGDPEALNKLRDEIQTQLFLFDCLRADGRKVPIELRMVLVWDEHGAFEGI 705

Query: 430  CGTYTDITEAKLIEESLKLSALVYDNSSEAMSVLDENGVIITVNAAFTDITGYSESEIRG 489
             G   DI++ +  E+ L+++A V+++S+ A+ + D  G I+  N AF+ ++GY+ S++  
Sbjct: 706  LGVGRDISQQRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSDVLD 765

Query: 490  QHIRMMYCDLNGHEFYQQMNDDIRNKGEWQGEMRQRRRNNEEYVIWLTINTIKDKDGLPH 549
            Q   M+  D       + +   +     W+GE+  +RRN E Y  W+ I  + D +G   
Sbjct: 766  QLPNMLTVDEQQEAHLRYVLKQLHQHSTWEGEVWLKRRNGEHYPAWVGITAVFDDEGDLA 825

Query: 550  RRVALFSDITDKKQSEHLIWKQANYDTLTGLPNRRMLLEYLSAEIKTADRNRNHFALMFL 609
              V  FSDI+++K SE  I + A YD LT LPNR +  + L   ++ A+R ++   LMFL
Sbjct: 826  SYVCFFSDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLHTALQAAERQKSWVVLMFL 885

Query: 610  DLDYFKEVNDTLGHAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLS-----SMAD 664
            DLD FK +ND+LGHA GD +L E A+RL  CV + D VAR+GGDEFT++L       MA 
Sbjct: 886  DLDRFKPINDSLGHAAGDRMLKEMATRLLGCVAEDDTVARMGGDEFTLLLQPRVNREMAL 945

Query: 665  HKGIERVAEHILRRIAEPYYLGEETTHISASIGITLYPDDSPSIEGLLKHADQAMYAAKD 724
            ++ I  VAE IL  + +P+ L      ++ASIGI L P D   +  L+K+AD AMY AK+
Sbjct: 946  NRAI-HVAEQILASLVKPFVLEGREFFVTASIGIALSPQDGNELSQLMKNADTAMYHAKE 1004

Query: 725  QGRNRFNYFTPSMQEYAKYRMRLIHDLRQAVLNKEFELHYQPIVTMATGEVLKAEALLRW 784
            +G+N F ++   M   A  R+ L  DLR A+   EF L+YQP  +     +  AEALLRW
Sbjct: 1005 RGKNNFQFYQADMNASALERLELESDLRHALEQNEFVLYYQPQFSGDGKRLTGAEALLRW 1064

Query: 785  FHPERGSVSPAEFIPVAEDTGLIVEIGNWVFEQAARQSAQWRKTLGVEIQISVNKSPIQF 844
             HP RG V P +FIPV E+ GL+V++G+WV  +A RQ   W +      ++SVN S  QF
Sbjct: 1065 RHPRRGLVPPGDFIPVLEELGLVVDVGDWVISEACRQLKTWHQNKVRVPKVSVNISARQF 1124

Query: 845  RDEGALLHNWLELLQQLDVTGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFG 904
             D G L      +L+   +  A + +E+TE +L+       + L + ++ G+ +++DDFG
Sbjct: 1125 SD-GQLGTRIATILKDTGLPPACLELELTESILMREVNEAMQILDSLKNLGLSIAVDDFG 1183

Query: 905  TGYSSLAYLKKFDIDYLKIDQSFTRNIDTDENDHTLCEAIIVMAHKLGMKVIAEGVETEA 964
            TGYSSL YLK+F ID LKID++F   + + E D  +  AII MAH L + VIAEGVET  
Sbjct: 1184 TGYSSLNYLKQFPIDVLKIDRTFVDGLPSGEQDAQIARAIIAMAHSLNLAVIAEGVETHE 1243

Query: 965  QRQVLLRAGCDYGQGYLFSKPVSASEFASKY 995
            Q   L   GCD  QGYLF +P+ A+ F +++
Sbjct: 1244 QLDFLREHGCDEVQGYLFGRPMPANRFEAQF 1274