Pairwise Alignments

Query, 998 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1276 a.a., Sensory box protein from Pseudomonas putida KT2440

 Score =  430 bits (1105), Expect = e-124
 Identities = 281/811 (34%), Positives = 432/811 (53%), Gaps = 41/811 (5%)

Query: 215  QKWIKVNPRLCQMLKYSEDELLHMT---WKQLTHPDDLDADVAKFEQMLAGNIDN----- 266
            Q+ I  N  L Q L Y   EL  M    W+ L HP+D     A ++ +     DN     
Sbjct: 468  QRMIFSNRHLGQTLGYDRTELAQMGDRFWELLLHPED----AAHYQALRRQQRDNCHDQP 523

Query: 267  YELDKRFIAKNGS--LVYTHMTVACKRTNHQVLLVISGYLDVTAQTLADREVLASREQLE 324
                 RF  ++GS         V  +     V  +I    DVT Q  A + +  S ++  
Sbjct: 524  LHCQLRFRHRDGSWRCYDIREQVLTRNAEGLVTRIIGVGKDVTVQIEASQSLRDSEQRYR 583

Query: 325  LVLSSSDLGVWDWD--IRNDHIERNTRSADILGCDIDMLNANSRQWMDSIVAEDRP---- 378
            ++  S    ++  D  ++ +++  + +S  +LG   D + AN  Q   SIVA        
Sbjct: 584  MLAESISDVIFSTDNQLKLNYVSPSVQS--VLGYQADWIFANGWQ---SIVANPAQLTGI 638

Query: 379  -QVLQSIEAHIRGETPQHKMEYRLKT-------LNRDIRWI-LDTGKVVSRDANNNALRM 429
              +++ +   +       ++  +L T       L  D R I ++   V+  D +     +
Sbjct: 639  YSLMERVSKAMGDPAQMAQLCSQLPTQLFLFDCLRADGRKIPIELRLVLVWDDDQRFEGV 698

Query: 430  CGTYTDITEAKLIEESLKLSALVYDNSSEAMSVLDENGVIITVNAAFTDITGYSESEIRG 489
             G   DI++ +  E+ L+++A V+++S+ A+ + D  G I+  N AF+ ++GY+ SE+  
Sbjct: 699  LGVGRDISQQRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSEVLD 758

Query: 490  QHIRMMYCDLNGHEFYQQMNDDIRNKGEWQGEMRQRRRNNEEYVIWLTINTIKDKDGLPH 549
            Q   M+  D       + +   +  +G W+GE+  +RR+ + Y  W+ I  + D +G   
Sbjct: 759  QLPGMLTVDEQQEGHLRYVVKQLHQRGSWEGEVWLKRRDGDHYPAWVGITAVLDDEGDLA 818

Query: 550  RRVALFSDITDKKQSEHLIWKQANYDTLTGLPNRRMLLEYLSAEIKTADRNRNHFALMFL 609
              V  F+DI+++K SE  I + A YD LT LPNR +  + L   ++ A+R +    LMFL
Sbjct: 819  SYVCFFTDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLYNALQQAERQKAWVVLMFL 878

Query: 610  DLDYFKEVNDTLGHAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLS-----SMAD 664
            DLD FK +ND+LGHA GD +L + A RL +CV D D VAR+GGDEFT++L       MA 
Sbjct: 879  DLDRFKPINDSLGHAAGDRMLKDMALRLLACVDDDDTVARMGGDEFTLLLQPRPTREMAL 938

Query: 665  HKGIERVAEHILRRIAEPYYLGEETTHISASIGITLYPDDSPSIEGLLKHADQAMYAAKD 724
            ++ I  VAE+IL  +  P+ L      ++ASIGI L P D   +  L+K+AD AMY AK+
Sbjct: 939  NRAI-HVAENILGSLVRPFVLENREFFVTASIGIALSPQDGSELSQLMKNADTAMYHAKE 997

Query: 725  QGRNRFNYFTPSMQEYAKYRMRLIHDLRQAVLNKEFELHYQPIVTMATGEVLKAEALLRW 784
            +G+N F ++   M   A  R+ L  DLR A+   EF L+YQP  +     +  AEALLRW
Sbjct: 998  RGKNNFQFYQAEMNASALERLELESDLRHAMEQNEFILYYQPQFSGDGKRLTGAEALLRW 1057

Query: 785  FHPERGSVSPAEFIPVAEDTGLIVEIGNWVFEQAARQSAQWRKTLGVEIQISVNKSPIQF 844
             HP RG V P +FIPV E+ GL+V++G+WV  +A+RQ   W K      ++SVN S  QF
Sbjct: 1058 RHPTRGLVPPGDFIPVIEELGLVVDVGDWVLREASRQLKAWHKAKVRVPKVSVNISARQF 1117

Query: 845  RDEGALLHNWLELLQQLDVTGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFG 904
             D G L      +L++  +  A + +E+TE +L+       + L + ++ G+ +++DDFG
Sbjct: 1118 SD-GQLGTRIANILEESGLPPACLELELTESILMREVNEALQILASLKNLGLSIAVDDFG 1176

Query: 905  TGYSSLAYLKKFDIDYLKIDQSFTRNIDTDENDHTLCEAIIVMAHKLGMKVIAEGVETEA 964
            TGYSSL YLK+F ID LKID++F   +   E D  +  AII MAH L + VIAEGVET  
Sbjct: 1177 TGYSSLNYLKQFPIDVLKIDRTFVDGLPEGEQDAQIARAIIAMAHSLNLAVIAEGVETHE 1236

Query: 965  QRQVLLRAGCDYGQGYLFSKPVSASEFASKY 995
            Q + L   GCD  QGYLF +P+ A +F +++
Sbjct: 1237 QLEFLREHGCDEVQGYLFGRPMPAHQFEAQF 1267