Pairwise Alignments

Query, 998 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1510 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  473 bits (1218), Expect = e-137
 Identities = 281/716 (39%), Positives = 417/716 (58%), Gaps = 18/716 (2%)

Query: 281  VYTHMTVACKRTNHQVLLVISGYLDVTAQTLADREVLASREQLELVLSSSDLGVWDWDIR 340
            V+   +++   T   V+LV+  + D+     A  ++  S+E+L  +++ S   V   D  
Sbjct: 793  VFVTPSMSMTGTPQSVVLVVVDHTDLVE---AQEQIRESQERLLSIMNHSTSAVSLKDAA 849

Query: 341  NDHIERNTRSADILGCDIDMLNANSRQWMDSIVAEDRPQVLQSIEAHIRGETP--QHKME 398
              +   N R  ++ G   + +   + Q    + + D  Q+L+S +  + G+    QH  E
Sbjct: 850  GRYEFINMRFEELFGLSAEEVIGKTDQ---QLFSRDIAQLLRSRDLEVMGQLSAIQHLEE 906

Query: 399  YRLKTLNRDIRWILDTGKVVSRDANNNALRMCGTYTDITEAKLIEESLKLSALVYDNSSE 458
                T      W LD+ +    D+N     +C   TD+T     EE L+L+A V+D + E
Sbjct: 907  MVFPTSKV---W-LDSVRFPIFDSNGVVRAVCSQSTDVTMKHHAEEQLRLAAKVFDRAGE 962

Query: 459  AMSVLDENGVIITVNAAFTDITGYSESEIRGQHIRMMYCDLNGHEFYQQMNDDIRNKGEW 518
            A+++ D +G IITVN +F  ITGYS  E+ G++ R +    +G +FY  M   +  +G W
Sbjct: 963  AITITDSSGNIITVNDSFCRITGYSHQEVIGKNPRFLQSGKHGKDFYDAMWRSLIEQGCW 1022

Query: 519  QGEMRQRRRNNEEYVIWLTINTIKDKDGLPHRRVALFSDITDKKQSEHLIWKQANYDTLT 578
            QGE+  RR+N E Y  WLT+N+++D++G     VA+FSDI+  K S+  I   A +D LT
Sbjct: 1023 QGEIFNRRKNGEIYPEWLTVNSVRDENGSVVNYVAIFSDISAIKSSQRRIEFLATHDELT 1082

Query: 579  GLPNRRMLLEYLSAEIKTADRNRNHFALMFLDLDYFKEVNDTLGHAMGDLLLIETASRLK 638
            G+PNR +L++ L   +  A R +   A++F+DLD FK +ND+LGH +GD LL +   RLK
Sbjct: 1083 GIPNRSLLMDRLKHAVAQAKRQKTKLAVLFIDLDNFKVINDSLGHDVGDQLLKQATERLK 1142

Query: 639  SCVRDADVVARLGGDEFTVVLSSMADHKGIERVAEHILRRIAEPYYLGEETTHISASIGI 698
             CVRD+D +ARLGGDEF  VL+ ++  K +  VA  I+  +   + + +++  +SASIGI
Sbjct: 1143 HCVRDSDTLARLGGDEFVAVLTDVSLEK-VNSVAARIVDFLGASFSINDKSLFVSASIGI 1201

Query: 699  TLYPDDSPSIEGLLKHADQAMYAAKDQGRNRFNYFTPSMQEYAKYRMRLIHDLRQAVLNK 758
            +++PDD      LLKHAD AMY AK++GRN++ +F   M+  A  R+ L   LR A+  K
Sbjct: 1202 SVFPDDGQDSLTLLKHADTAMYRAKERGRNQYQFFADEMKVIALQRLTLETGLRLALETK 1261

Query: 759  EFELHYQPIVTMATGEVLKAEALLRWFHPERGSVSPAEFIPVAEDTGLIVEIGNWVFEQA 818
             F + YQP V + TGEV+ AEALLRW  P  G VSPA FIP+AE  GLI  IG  VF   
Sbjct: 1262 SFRMCYQPQVDIHTGEVVGAEALLRWRDPTLGEVSPAHFIPIAESCGLIGAIGETVFTMV 1321

Query: 819  ARQSAQWRKTLGVEIQISVNKSPIQFRDEG--ALLHNWLELLQQLDVTGAGVCVEITEGL 876
              Q A WR+      +I++N S  Q RD G  A + +WL+      ++   + +E+TE  
Sbjct: 1322 LEQIAYWREKGLTVPRIAINVSAHQLRDAGFAAKVGSWLD---SSGISSELIGIELTESA 1378

Query: 877  LLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKFDIDYLKIDQSFTRNIDTDEN 936
            L++    V E L ++   G++VS+DDFGTGYSSL+YLKK  I  LKID+SF   I  + +
Sbjct: 1379 LMERIDMVKEMLTSFDGMGMKVSIDDFGTGYSSLSYLKKLPIHELKIDRSFVDGIALERD 1438

Query: 937  DHTLCEAIIVMAHKLGMKVIAEGVETEAQRQVLLRAGCDYGQGYLFSKPVSASEFA 992
            D ++ +AII M+  LGM+V+AEGVE+E Q  VL   GCD  QGYLF +P+S   FA
Sbjct: 1439 DRSIAKAIIDMSRALGMRVVAEGVESEEQLGVLKEEGCDMVQGYLFHRPLSPEAFA 1494