Pairwise Alignments

Query, 998 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 964 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  511 bits (1317), Expect = e-149
 Identities = 270/567 (47%), Positives = 375/567 (66%), Gaps = 20/567 (3%)

Query: 444 ESLKLSALVYDNSSEAMSVLDENGVIITVNAAFTDITGYSESEIRGQHIRMMYCDLNGHE 503
           E L+L+A V+D +SEA+++ D  G+I++VN  F  +TGY   E+ G++  ++    +  +
Sbjct: 387 EQLQLAASVFDGTSEAIAITDAEGLIVSVNKPFCRLTGYELEELVGRNPNILKSGRHDSD 446

Query: 504 FYQQMNDDIRNKGEWQGEMRQRRRNNEEYVIWLTINTIKDKDGLPHRRVALFSDITDKKQ 563
           FY +M   I   G W GE+  RR+N E Y   LTI+TI D  G   RRVA+ SDIT++K+
Sbjct: 447 FYAEMWRSITATGNWSGEVWNRRKNGEVYPERLTISTIYDAKGQIQRRVAIASDITEQKK 506

Query: 564 SEHLIWKQANYDTLTGLPNRRMLLEYLSAEIKTADRNRNHFA-LMFLDLDYFKEVNDTLG 622
           +E +IW QAN+D LTGLPNRR  L+ L  ++  AD   +    ++ +DLD FKEVNDTLG
Sbjct: 507 AEEIIWHQANHDLLTGLPNRRRFLDLLRKDLARADSLPDMVVGVLLIDLDRFKEVNDTLG 566

Query: 623 HAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMADHKGIERVAEHILRRIAEP 682
           HA+GD LL+E A R++SC+ + DV+  LG DEF V +        +E     I   IAEP
Sbjct: 567 HAIGDQLLLEVARRIRSCLSEKDVIGHLGADEFIVSMIDDLSTTRLEAAVAAIRMVIAEP 626

Query: 683 YYLGEETTHISASIGITLYPDDSPSIEGLLKHADQAMYAAKDQGRNRFNYFTPSMQEYAK 742
           +  G +T H++ASIGIT YP D   +E LL++ DQA+  AK+ GR+R   FT SM+E  +
Sbjct: 627 FRSGSDTLHLTASIGITAYPTDGGDMEELLRNVDQAVREAKNGGRDRSCCFTESMREAGQ 686

Query: 743 YRMRLIHDLRQAVLNKEFELHYQPIVTMATGEVLKAEALLRWFHPERGSVSPAEFIPVAE 802
            R++L +DLR+A+   +FE++YQPI+ M +  ++KAEALLRW HPERG VSP  FIP+AE
Sbjct: 687 TRLQLANDLREALSEGQFEVYYQPIIDMPSRAIVKAEALLRWRHPERGFVSPTIFIPIAE 746

Query: 803 DTGLIVEIGNWVFEQAA----RQSAQWRKTLG--------------VEIQISVNKSPIQF 844
           +TGLI +IGNWVF QAA    R     R  +G                 QI+VNKSP QF
Sbjct: 747 ETGLICDIGNWVFRQAAATARRLCDSCRYVVGGICRKDDIAGPSTPCRFQIAVNKSPRQF 806

Query: 845 RDEGALLHNWLELLQQLDVTGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFG 904
               + L  W E L++L+++   + +E+TEGLLL     V E+L  +R AG+Q++LDDFG
Sbjct: 807 FSGFSHL-EWAEHLRELNISPQCISIEVTEGLLLGQHAEVMERLTKFRAAGMQIALDDFG 865

Query: 905 TGYSSLAYLKKFDIDYLKIDQSFTRNIDTDENDHTLCEAIIVMAHKLGMKVIAEGVETEA 964
           TGYS+++YLK+FDIDY+KIDQSF R++  D +D  + EAII MAH+LGMKV+AEG+ETE 
Sbjct: 866 TGYSAMSYLKRFDIDYIKIDQSFVRDMTVDSSDRAIAEAIIAMAHRLGMKVVAEGIETEE 925

Query: 965 QRQVLLRAGCDYGQGYLFSKPVSASEF 991
           Q  +L  AGCD+GQGYLF+KP+   +F
Sbjct: 926 QYALLAAAGCDFGQGYLFAKPMPVDQF 952