Pairwise Alignments

Query, 998 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 703 a.a., GGDEF domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  404 bits (1037), Expect = e-116
 Identities = 243/598 (40%), Positives = 339/598 (56%), Gaps = 6/598 (1%)

Query: 398 EYRLKTLNRDIRWILDTGKVVSRDANNNALRMCGTYTDITEAKLIEESLKLSALVYDNSS 457
           E R++T + +I WI +  + V  D  +  +   GT  +IT  K  EESL+L+A V++   
Sbjct: 97  EARVRTRSGEIIWIAENARAVY-DGRDRLVCYEGTVQNITARKQAEESLRLAATVFETVG 155

Query: 458 EAMSVLDENGVIITVNAAFTDITGYSESEIRGQHIRMMYCDLNGHEFYQQMNDDIRNKGE 517
           EA+ V D    I+ VNAAF  +TG++ +E+ GQ   ++  ++ G    ++M     N G+
Sbjct: 156 EAIVVTDRERRILAVNAAFERMTGWNAAEMVGQTCDLLAVEMIGLREIEEMWRLAANTGQ 215

Query: 518 WQGEMRQRRRNNEEYVIWLTINTIK---DKDGLPHRRVALFSDITDKKQSEHLIWKQANY 574
           W GE   RR+ +E +   L +  +    D  G   R V L  DIT K++ E  I   A++
Sbjct: 216 WSGETWTRRKESEPFPAALALTAVDQGADAKGEDGRFVLLLRDITRKRRDEQRIRFHASH 275

Query: 575 DTLTGLPNRRMLLEYLSAEIKTADRNRNHFALMFLDLDYFKEVNDTLGHAMGDLLLIETA 634
           D LT LPNR  ++E L   I  A++     A+++LD++ FK++ND+ GHA+GD LL + A
Sbjct: 276 DALTRLPNRHTVMEALGEAIVRAEQTGERLAVLYLDVNRFKDINDSYGHAVGDELLRQVA 335

Query: 635 SRLKSCVRDADVVARLGGDEFTVVLSSMADHKGIERVAEHILRRIAEPYYLGEETTHISA 694
            RLK+CVR +DV+ RLGGDEF ++L S+ DH   +  A  +L   AEP+ +         
Sbjct: 336 RRLKACVRASDVIGRLGGDEFVMLLPSVGDHTAAQACANKVLYAFAEPFDMEGLQLFAGT 395

Query: 695 SIGITLYPDDSPSIEGLLKHADQAMYAAKDQGRNRFNYFTPSMQEYAKYRMRLIHDLRQA 754
           SIGI LYPDD+   E LL  AD AMY AK +G   ++ F   M      R+ L +DLR A
Sbjct: 396 SIGIALYPDDADGAESLLSRADAAMYHAK-RGGLPYSCFDIEMDRQVAERVSLENDLRLA 454

Query: 755 VLNKEFELHYQPIVTMATGEVLKAEALLRWFHPERGSVSPAEFIPVAEDTGLIVEIGNWV 814
           +   +F L YQP V   +G ++ AEAL+RW HP R  VSP  FIPVAE  GLI  I +WV
Sbjct: 455 LGEDQFRLVYQPKVDALSGAIIGAEALIRWRHPVRADVSPGLFIPVAERAGLIGAIDDWV 514

Query: 815 FEQAARQSAQWRKTLGVEIQISVNKSPIQFRDEGALLHNWLELLQQLDVTGAGVCVEITE 874
             +A RQ A+WR    +   ISVN SP QF D G L       L    +  + + +EITE
Sbjct: 515 LVEACRQVAEWRAQGLILPSISVNLSPAQFHD-GRLKEKVKAALAGSGLPPSVLELEITE 573

Query: 875 GLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKFDIDYLKIDQSFTRNIDTD 934
            ++        E L      GV+VSLDDFGTGYSSLAYLK F +  LKID++F   +  +
Sbjct: 574 TMMASDVDRAIEILGQLTTLGVRVSLDDFGTGYSSLAYLKLFPVSTLKIDRAFVTELPGN 633

Query: 935 ENDHTLCEAIIVMAHKLGMKVIAEGVETEAQRQVLLRAGCDYGQGYLFSKPVSASEFA 992
             D  +  ++I +A  LG  VIAEGVET  Q   L   GC   QG+LFS+PV+A+ FA
Sbjct: 634 AKDGAIIASVIALAGNLGFSVIAEGVETREQAAFLAARGCPIMQGFLFSRPVNAATFA 691



 Score = 27.3 bits (59), Expect = 0.004
 Identities = 38/173 (21%), Positives = 72/173 (41%), Gaps = 10/173 (5%)

Query: 197 FRSQFNIGNIGIAITGIDQKWIKVNPRLCQMLKYSEDELLHMTWKQLTHPDDLD-ADVAK 255
           +RS F     GI  T  D +++  NP L ++  Y +   L      +     +D AD  +
Sbjct: 23  YRSLFENAVEGIYRTTPDGRYLDANPALARIYGYKDPAELIAGLTDIARGLYVDPADRER 82

Query: 256 FEQMLAGNIDNYELDKRFIAKNGSLVYTHMTVACKRTNHQVLLVISGYL-DVTAQTLADR 314
           F ++LA +      + R   ++G +++              L+   G + ++TA+  A+ 
Sbjct: 83  FREILARDSVVRNFEARVRTRSGEIIWIAENARAVYDGRDRLVCYEGTVQNITARKQAEE 142

Query: 315 EVLASREQLELVLSSSDLGVWDWDIR----NDHIERNT--RSADILGCDIDML 361
            +  +    E V     + V D + R    N   ER T   +A+++G   D+L
Sbjct: 143 SLRLAATVFETV--GEAIVVTDRERRILAVNAAFERMTGWNAAEMVGQTCDLL 193