Pairwise Alignments
Query, 998 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1
Subject, 830 a.a., two-component system response regulator from Magnetospirillum magneticum AMB-1
Score = 429 bits (1103), Expect = e-124
Identities = 245/683 (35%), Positives = 379/683 (55%), Gaps = 5/683 (0%)
Query: 309 QTLADREVLASREQLELVLSSSDLGVWDWDIRNDHIERNTRSADILG-CDIDMLNANSRQ 367
++ AD + S + + ++ GV D +I N ++G D ++ R
Sbjct: 132 RSAADAALRTSESRFRALFDNAGTGVILSDAAGAYIHCNPAFCTMVGYSDAELQKMTYR- 190
Query: 368 WMDSIVAEDRPQVLQSIEAHIRGETPQHKMEYRLKTLNRDIRWILDTGKVVSRDANNNAL 427
D ED Q + + G T +++ R + +I W T + ++N
Sbjct: 191 --DITYPEDMNAHTQMRDDMMAGRTDSYELTKRYIRRDGNILWARLTVTAMREGSDNELR 248
Query: 428 RMCGTYTDITEAKLIEESLKLSALVYDNSSEAMSVLDENGVIITVNAAFTDITGYSESEI 487
D+TE K +E+ ++L+A V++++ E + V DE II VN AFT++TGY E+
Sbjct: 249 FTVAVVEDVTEKKRLEDHMRLAATVFESTGEGLFVTDEKRQIIHVNPAFTELTGYPADEV 308
Query: 488 RGQHIRMMYCDLNGHEFYQQMNDDIRNKGEWQGEMRQRRRNNEEYVIWLTINTIKDKDGL 547
G+ + + + EFY + + G+WQGE+ RR+ E + WL I+ ++++ G
Sbjct: 309 IGRTPKFLASGRHTPEFYDAVFKTLAECGKWQGEIWNRRKTGEMFAEWLNISVVRNERGE 368
Query: 548 PHRRVALFSDITDKKQSEHLIWKQANYDTLTGLPNRRMLLEYLSAEIKTADRNRNHFALM 607
VA+FSDIT +KQ E + QAN+D LT LPNR + E L+ + A RN+ AL+
Sbjct: 369 LTNYVAVFSDITSRKQDEERLNYQANHDPLTRLPNRTLFQERLTRALTRAHRNQAIVALL 428
Query: 608 FLDLDYFKEVNDTLGHAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMADHKG 667
F+DLD+FK+VNDTLGH GD+LL + A RL SCVR D VARL GDEFTV+L +++ +
Sbjct: 429 FIDLDFFKQVNDTLGHLAGDILLQQVAERLTSCVRQGDTVARLAGDEFTVILEEISEPRD 488
Query: 668 IERVAEHILRRIAEPYYLGEETTHISASIGITLYPDDSPSIEGLLKHADQAMYAAKDQGR 727
VA IL +AEP+ L IS+SIG+ LYP D + L+K AD AMY AK QGR
Sbjct: 489 GAVVAHKILSLLAEPFDLQGHEARISSSIGVALYPSDGGDAQTLIKLADAAMYRAKHQGR 548
Query: 728 NRFNYFTPSMQEYAKYRMRLIHDLRQAVLNKEFELHYQPIVTMATGEVLKAEALLRWFHP 787
N + + S+ A R+ L LR AV +EF LHYQPI +G V+ EALLRW HP
Sbjct: 549 NACRFHSESINAQAFERLALESALRHAVERREFLLHYQPIFDARSGSVVAVEALLRWRHP 608
Query: 788 ERGSVSPAEFIPVAEDTGLIVEIGNWVFEQAARQSAQWRKTLGVEIQISVNKSPIQFRDE 847
+ G + P +F+P+AE+TGLI+ +G +V ++A RQ+ W +++ +N S Q R
Sbjct: 609 DFGMIMPNQFLPLAEETGLIMPVGKFVLDEACRQAKAWLDAGHTGLKVGINLSSRQLR-A 667
Query: 848 GALLHNWLELLQQLDVTGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGY 907
L+ + L+ + + + +++ E ++D V ++ GV++++D FG+GY
Sbjct: 668 PELIEDIAAALEGSGLPPSALELDVPESAIIDKGQDVDAIFTQFKTLGVRMAIDAFGSGY 727
Query: 908 SSLAYLKKFDIDYLKIDQSFTRNIDTDENDHTLCEAIIVMAHKLGMKVIAEGVETEAQRQ 967
SS A+L+K + LKIDQ F R+ + + + AI+ +A L + V+A G+ETE Q
Sbjct: 728 SSFAFLRKLPSNTLKIDQGFVRDAASGAEESEIVTAIVAVARGLHLSVVAPGIETEEQLA 787
Query: 968 VLLRAGCDYGQGYLFSKPVSASE 990
L++ CD QG+LF+ P+ A E
Sbjct: 788 HLVKYDCDMVQGFLFAHPMPAEE 810
Score = 83.6 bits (205), Expect = 5e-20
Identities = 86/385 (22%), Positives = 169/385 (43%), Gaps = 36/385 (9%)
Query: 197 FRSQFNIGNIGIAITGIDQKWIKVNPRLCQMLKYSEDELLHMTWKQLTHPDDLDADVAKF 256
FR+ F+ G+ ++ +I NP C M+ YS+ EL MT++ +T+P+D++A
Sbjct: 146 FRALFDNAGTGVILSDAAGAYIHCNPAFCTMVGYSDAELQKMTYRDITYPEDMNAHTQMR 205
Query: 257 EQMLAGNIDNYELDKRFIAKNGSLVYTHMTVACKR--TNHQVLLVISGYLDVT-AQTLAD 313
+ M+AG D+YEL KR+I ++G++++ +TV R +++++ ++ DVT + L D
Sbjct: 206 DDMMAGRTDSYELTKRYIRRDGNILWARLTVTAMREGSDNELRFTVAVVEDVTEKKRLED 265
Query: 314 REVLASREQLELVLSSSDLGVWDWDIRNDHIERNTRSADILGCDIDMLNANSRQWMDSIV 373
LA+ V S+ G++ D + I N ++ G D + + +++ S
Sbjct: 266 HMRLAA-----TVFESTGEGLFVTDEKRQIIHVNPAFTELTGYPADEVIGRTPKFLAS-- 318
Query: 374 AEDRPQVLQSI-EAHIRGETPQHKMEYRLKTLNRDIRWILDTGKVVSRDANNNALRMCGT 432
P+ ++ + Q ++ R KT W+ V R+
Sbjct: 319 GRHTPEFYDAVFKTLAECGKWQGEIWNRRKTGEMFAEWL---NISVVRNERGELTNYVAV 375
Query: 433 YTDITEAKLIEESLKLSA------------LVYDNSSEAMSVLDENGVIITVNAAFTDIT 480
++DIT K EE L A L + + A++ N I+ + F D+
Sbjct: 376 FSDITSRKQDEERLNYQANHDPLTRLPNRTLFQERLTRALTRAHRNQAIVAL--LFIDLD 433
Query: 481 GYSESEIRGQHIRMMYCDLNGHEFYQQMNDDIRNKGEWQGEMRQRRRNNEEYVIWLTINT 540
+ + H+ D+ + +++ +R QG+ R +E VI I+
Sbjct: 434 FFKQVNDTLGHLA---GDILLQQVAERLTSCVR-----QGDTVARLAGDEFTVILEEISE 485
Query: 541 IKDKDGLPHRRVALFSDITDKKQSE 565
+D + H+ ++L ++ D + E
Sbjct: 486 PRDGAVVAHKILSLLAEPFDLQGHE 510