Pairwise Alignments

Query, 998 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 831 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  427 bits (1098), Expect = e-123
 Identities = 227/548 (41%), Positives = 329/548 (60%), Gaps = 1/548 (0%)

Query: 444 ESLKLSALVYDNSSEAMSVLDENGVIITVNAAFTDITGYSESEIRGQHIRMMYCDLNGHE 503
           E L L   V+DN+ E M   D    II VN AFT ITGY+  E  G   RM+    +   
Sbjct: 29  ERLSLYQAVFDNAFEGMFATDAANRIIAVNPAFTAITGYAAEEAIGNDPRMLSSGFHDPA 88

Query: 504 FYQQMNDDIRNKGEWQGEMRQRRRNNEEYVIWLTINTIKDKDGLPHRRVALFSDITDKKQ 563
           FYQ+M D +   G+WQGE+  R ++     +WL+I + +  DG   RR+A+F D+T+ ++
Sbjct: 89  FYQEMWDQLSTTGQWQGEVVDRHKDGRPVRLWLSITSQRGADGKVARRIAVFRDVTEARE 148

Query: 564 SEHLIWKQANYDTLTGLPNRRMLLEYLSAEIKTADRNRNHFALMFLDLDYFKEVNDTLGH 623
           +   +W+++N+D LT LPNR + L+ L   +  A R  +  A++F+ LD FK +ND+LGH
Sbjct: 149 TAEQLWQRSNFDPLTELPNRNLFLDRLLQALVLAGREGSKVAMLFIGLDGFKNINDSLGH 208

Query: 624 AMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMADHKGIERVAEHILRRIAEPY 683
            +GD +L E A R ++C+R  D  AR GGDEFTVVLS +     +E V   +L  + EP+
Sbjct: 209 WIGDKVLQEAARRFQNCLRQGDTAARFGGDEFTVVLSGVRATAEVEAVIRSVLEVLQEPF 268

Query: 684 YLGEETTHISASIGITLYPDDSPSIEGLLKHADQAMYAAKDQGRNRFNYFTPSMQEYAKY 743
            +      IS SIG+ ++P D   ++ L+++A  A+  AK  GRN F +FTP+M   A+ 
Sbjct: 269 VVEHHHILISCSIGVCMWPGDGEDVDSLMRNATAALQQAKQAGRNTFRFFTPAMDARAQA 328

Query: 744 RMRLIHDLRQAVLNKEFELHYQPIVTMATGEVLKAEALLRWFHPERGSVSPAEFIPVAED 803
           R RL  +L  A+   EF L +QP+V + +G+V  AEALLRW +   G VSP +F+P+AE+
Sbjct: 329 RSRLADELSGALSQGEFHLVFQPLVDVKSGKVNAAEALLRWHNRYLGVVSPDQFVPLAEE 388

Query: 804 TGLIVEIGNWVFEQAARQSAQWRKTLGVEIQISVNKSPIQFRDEGALLHNWLELLQQLDV 863
            GLI  IG W+   A R++  W+     EI I+VN SP QF+ +G ++      L+   +
Sbjct: 389 IGLIRPIGEWLLTAACREALVWQGMGLGEINIAVNISPRQFQ-QGDIVGIIRRALEDTRL 447

Query: 864 TGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKFDIDYLKI 923
               + +EITEGLLL     +  K+ A R  GV +S+DDFGTGYSSL+YLK F +D LKI
Sbjct: 448 PPWLLTIEITEGLLLSNGEEILAKMEAIRTLGVSLSVDDFGTGYSSLSYLKSFPVDVLKI 507

Query: 924 DQSFTRNIDTDENDHTLCEAIIVMAHKLGMKVIAEGVETEAQRQVLLRAGCDYGQGYLFS 983
           D+SF  ++    +D T+ EAII + H L ++V+AEGVET+ Q   +   GCD  QGY FS
Sbjct: 508 DRSFIADMGDHSDDATMVEAIIALGHSLHLEVVAEGVETKQQLDFITAQGCDVAQGYYFS 567

Query: 984 KPVSASEF 991
            P+S   F
Sbjct: 568 PPLSGPRF 575