Pairwise Alignments

Query, 998 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1516 a.a., diguanylate cyclase (GGDEF) domain from Kangiella aquimarina DSM 16071

 Score =  446 bits (1148), Expect = e-129
 Identities = 261/687 (37%), Positives = 387/687 (56%), Gaps = 15/687 (2%)

Query: 306  VTAQTLADREVLASREQLELVLSSSDLGVWDWDIRNDHIERNTR-----SADILGCDIDM 360
            V  + +A  ++  S E+L+L L  S   +WDW I +  +  +         D +     M
Sbjct: 813  VRERRMAALQLTQSEERLKLSLWGSGDELWDWQIPSGALHLSNEWPYDFPRDGVRSGYSM 872

Query: 361  LNANSRQWMDSIVAEDRPQVLQSIEAHIRGETPQHKMEYRLKTLNRDIRWILDTGKVVSR 420
             N+N       I   D P V QS+ AH+  ++  ++  YR+        W+LD GKVVSR
Sbjct: 873  ANSN-------IHPNDLPYVRQSLNAHLADKSMHYESTYRISDEKGGWIWVLDRGKVVSR 925

Query: 421  DANNNALRMCGTYTDITEAKLIEESLKLSALVYDNSSEAMSVLDENGVIITVNAAFTDIT 480
            D N   LRM GT  +ITE K  E+ L +    +DN S+ + +LDEN   I VN AFT IT
Sbjct: 926  DDNQKPLRMAGTLKNITELKNTEQQLSMIVKSFDNISDGVWILDENFHYIAVNKAFTKIT 985

Query: 481  GYSESEIRGQHIRMMYCDLNGHEFYQQMNDDIRNKGEWQGEMRQRRRNNEEYVIWLTINT 540
            G+ ESE+ G+ +++        E ++++ +++ +KG W GE+  +R++N  Y I + I+ 
Sbjct: 986  GFEESEVLGKLMKVSALHKITDEEFRELREELADKGFWYGELVAKRKDNSTYPIEINIDV 1045

Query: 541  IKDKDGLPHRRVALFSDITDKKQSEHLIWKQANYDTLTGLPNRRMLLEYLSAEIKTADRN 600
            + D DG     V +FSDIT +KQ+E  + + A  D LT L NR     +    I  ++R 
Sbjct: 1046 VLDNDGNVINYVGVFSDITFRKQAEKELRRLATVDQLTDLKNRTSFRNHFEDLIAHSERG 1105

Query: 601  RNHFALMFLDLDYFKEVNDTLGHAMGDLLLIETASRLKSCVRDAD-VVARLGGDEFTVVL 659
              H AL+F+DLD FK +ND+LGH +GD LLI  A  L+    +   VVARLGGDEFTV+L
Sbjct: 1106 DQH-ALLFIDLDNFKRINDSLGHGIGDELLIYVAKILQEITSEQHGVVARLGGDEFTVLL 1164

Query: 660  SSMADHKGIERVAEHILRRIAEPYYLGEETTHISASIGITLYPDDSPSIEGLLKHADQAM 719
              +       ++A+ IL   A+P  L      +S SIGI +YP++  S E LLK+AD AM
Sbjct: 1165 QDVDTWNKPAKIAQAILDEFAKPLPLSTAEVVVSPSIGIVMYPENGLSAEELLKNADTAM 1224

Query: 720  YAAKDQGRNRFNYFTPSMQEYAKYRMRLIHDLRQAVLNKEFELHYQPIVTMATGEVLKAE 779
            Y AK +G+N + ++T  M E AK R+ L  +LRQA+   EF + YQP V++ TG++   E
Sbjct: 1225 YYAKKKGKNTYQFYTRQMNEQAKLRITLEGELRQAIEKDEFVMFYQPKVSLQTGKITGME 1284

Query: 780  ALLRWFHPERGSVSPAEFIPVAEDTGLIVEIGNWVFEQAARQSAQWRKTLGVEIQISVNK 839
            AL+RW +P RG V P EFIP+AE+ G I+ I   V E+   Q   W+       +++VN 
Sbjct: 1285 ALVRWRNPRRGLVLPNEFIPLAEEAGFIIPISQRVIEKTCLQIRDWQNRGIFHGKVAVNL 1344

Query: 840  SPIQFRDEGALLHNWLELLQQLDVTGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVS 899
            S +QF  E  L       L    +    +  EITEG++++      +++   R+ G+ ++
Sbjct: 1345 SAVQFYHEN-LWETVKNALHLAKIEPDALEFEITEGMVMEDLTQSIQQMRTLREMGISLA 1403

Query: 900  LDDFGTGYSSLAYLKKFDIDYLKIDQSFTRNIDTDENDHTLCEAIIVMAHKLGMKVIAEG 959
            LDDFG GYSSL  LK F ID LKID++F  +++  + D  L  +I+ +AH L +KV+AEG
Sbjct: 1404 LDDFGVGYSSLGNLKDFPIDTLKIDRTFVWDLEDSDRDRNLVASIVTLAHNLDIKVVAEG 1463

Query: 960  VETEAQRQVLLRAGCDYGQGYLFSKPV 986
            VE   Q   L   GC+  QG++FS+PV
Sbjct: 1464 VENRNQVDALRDMGCEEIQGFIFSRPV 1490