Pairwise Alignments

Query, 684 a.a., type I restriction-modification system, M subunit, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 540 a.a., N-6 DNA methylase from Serratia liquefaciens MT49

 Score = 98.2 bits (243), Expect = 9e-25
 Identities = 96/393 (24%), Positives = 170/393 (43%), Gaps = 96/393 (24%)

Query: 306 DAKGAAYQEVVGD-NLRGDRGQYFTPRGAIKLIVEMMAPQP--HEKVLDPSCGTGGFLEQ 362
           D KG  Y+ ++      G  GQ+ TPR  I+ +VEMM P P  +E V DP+CGTGGFL  
Sbjct: 138 DTKGDLYEYLLSKLTTAGINGQFRTPRHIIRAVVEMMEPNPARNEAVCDPACGTGGFLAT 197

Query: 363 TLSFINRKLCEEEEV--KLG----AETTEEFI---SIQQQIKKFAENNLF-GCDFDPFLC 412
           +  ++  K    E +  +LG     E  E+ I    +    +   + N+F G DFD  + 
Sbjct: 198 SYEYLLEKYSSLESIHSELGVNERGELEEQKIFTGDLLTDYRAHVDQNMFHGYDFDTTML 257

Query: 413 RASQMNVVMASNAMANIYHMNSLEYPHGHLKGVEPAKSKIPVGDSSGKDGSIDVILTNPP 472
           R + MN++M      +I++ +++          +      P         + ++IL NPP
Sbjct: 258 RIAAMNLIMHGVEQPDIHYQDTMS---------QSFNDNFP----QASKNAFNLILANPP 304

Query: 473 FGSDIPVTDKQILEQYDLAYVWERTENGGFRKTERRKDAVSPEILFIERCVQWLKQGGRM 532
           F   +   D++ ++   LA V          KT++       E+LF+ R +Q LK GGR 
Sbjct: 305 FTGSL---DEEDIDPSLLATV----------KTKK------TELLFLARILQMLKVGGRS 345

Query: 533 GIVLPDGIL--GNPGDEYIRWWLMQECWVLGCVDLPVESFIVEANVNILTSLLFLKKKTD 590
             ++P G+L   +   + +R  L+++  +   ++LP  S + +    + T++L   K   
Sbjct: 346 ATIIPQGVLFGSSKAHQSLRKTLVEDNQLEAVINLP--SGVFKPYAGVATAILIFTK--- 400

Query: 591 TEKDAIAFGGEPEYPVFMAVAEKVGFDRRGNTLYERHPDGEEKVIEEDVEERIRINGQNV 650
                   GG+ +   F                Y+ H DG    +++             
Sbjct: 401 --------GGQTDNVWF----------------YDLHNDGYS--LDD------------- 421

Query: 651 VRKLKRRSKILDDDLPKIAKAWKEFRANNPEPS 683
                +R+ + ++DLP +  +WK +R N   P+
Sbjct: 422 -----KRTPVKENDLPHLIASWKHYRLNKGLPT 449