Pairwise Alignments

Query, 226 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 206 a.a., PAS domain-containing protein from Dickeya dadantii 3937

 Score = 77.8 bits (190), Expect = 1e-19
 Identities = 54/205 (26%), Positives = 97/205 (47%), Gaps = 6/205 (2%)

Query: 10  DLDILKSIENIVDGIAAMYGEHTEVVLHSLDAKHPSVIKIANGHVTGREVGAPITNLALL 69
           D  + + +  I +G+   +    EVV+H L     +++ I N +++GREVG P T L L 
Sbjct: 6   DSILFEQLGAIAEGLGETFAPFCEVVIHDLKNPEHAILAIYN-NLSGREVGQPATELGLA 64

Query: 70  KLKTGQ--DISNSYLTKCANGKTLRSITTVIRNPKNLPIGLLCINTDMDAPLQSVLRTMM 127
           ++ + +   I  +Y  + A+G+ ++S +  I++  +  +  LC+N DM            
Sbjct: 65  RIASPEFPRIVANYANQFADGRPVKSTSIGIKDASDEYVASLCLNVDMTLFRGIQHAFAR 124

Query: 128 PEQLLGSELTSSPEVFARNIDEALHSTIDSVNHEIRANPAISASQKSREIVNQLHELGIF 187
             Q+    L  S E       EA+   ID     +   P    + + R+++ +L E G+ 
Sbjct: 125 FNQVSTGALNESLEPSG---SEAIRQRIDQFAARLATTPRALKAPERRQLIQELREHGLL 181

Query: 188 ELKDSAQVAATRLGISVHSIYRYLR 212
           ++K S +  A  LGIS  S+Y Y R
Sbjct: 182 DVKKSMETIAQHLGISRASVYSYAR 206