Pairwise Alignments

Query, 399 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 380 a.a., FIG00924762: possible membrane protein from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  112 bits (281), Expect = 1e-29
 Identities = 108/397 (27%), Positives = 179/397 (45%), Gaps = 58/397 (14%)

Query: 22  RNANLDAIRGLAVLGIFFMNIYFMGI--------SFYGYAPHQIPLLWDQILQTFSNFFI 73
           RN  LD +RG+A+LGI  +NI   G+        ++YG    +    W        +   
Sbjct: 3   RNVTLDFVRGVAILGILLLNISAFGLPKAAYLNPAWYGAIVPEDAWSW-----AILDIVA 57

Query: 74  EGRFISLFSMLFGVGLYIQYQKFTAKGLAAYPLLRSRLKWLIIFGLIHGILIWSGDILLT 133
           + +F++LF++LFG GL    Q    +G      ++SRL  L++ G IH +  W GDILL 
Sbjct: 58  QAKFLTLFALLFGAGL----QMLLPRGKQ---WIQSRLTLLVLLGFIHALFFWDGDILLA 110

Query: 134 YGISGFLALCYRDITIAEQ-KRKANIFIFMSLV---ITCLLALSGSDELFTR----ESAF 185
           YG+ G +  C+R I  A   K   N  I + LV   +  LL +  S E         SA 
Sbjct: 111 YGLVGLI--CWRLIRDAPSVKSLFNTGILLYLVGIGVLLLLGVVSSSETSRAWTPDASAI 168

Query: 186 FAEQYSAWTSSYPNQLLLHLIQV-GYTALALPFTLMWFTAGLMLLGMALYRQGIFEQGFN 244
             E+Y  W  +   + + +  ++   + LAL     W  AG+MLLG AL R G  +  ++
Sbjct: 169 LYEKY--WKLNGGMEAISNRAEMLSNSLLALGAQYGWQLAGMMLLGAALMRSGWLKGQYS 226

Query: 245 ----RNTLLKLALASLVLSTMDTLLG------------LTQNPMLVMFSDIIVMLSAIPM 288
               R T   L    L+++    +L             L Q P      ++   L  +  
Sbjct: 227 LRHYRRTGALLVALGLMINLPAVILQWRLDWAYRWCAFLLQAPR-----ELSAPLQTLGY 281

Query: 289 ALIYIHILVSICQNRSTVLKPLQNVGKLAFSLYILQSIVGVLVFRHLAPELLLSLDRWGY 348
           A +       + + R T+   +  VG++A + Y+LQ+I+   +F      L +  +R   
Sbjct: 282 AALMFGFWPQLSRCRLTLA--IACVGRMALTNYLLQTIICTTLFYQFG--LFMKFNRLEL 337

Query: 349 MAIALVYSVVQLLLASLYLRYFKQGPLEKLWRHLAFK 385
           +   +    + LL + ++LR+++QGP+E LWR L  +
Sbjct: 338 LFFVVPVWAINLLFSVIWLRFWRQGPVEWLWRQLTLR 374