Pairwise Alignments

Query, 457 a.a., signal recognition particle protein Ffh (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 458 a.a., RNA-binding protein from Pseudomonas simiae WCS417

 Score =  656 bits (1692), Expect = 0.0
 Identities = 335/453 (73%), Positives = 393/453 (86%), Gaps = 2/453 (0%)

Query: 1   MFENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAV 60
           MFENLTDRLS+TL++++G+ +LTE+N+K+TLREVRMALLEADVALPVV++FVN+VKERAV
Sbjct: 1   MFENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNSVKERAV 60

Query: 61  GQEVAKSLSPGQAFIKIVQSELEKSMGEANQALDLATQPPAVVMMAGLQGAGKTTSVAKL 120
           G EV++SL+PGQAF+KIVQ+ELE  MG AN+ L+L+  PPAVV+MAGLQGAGKTT+  KL
Sbjct: 61  GTEVSRSLTPGQAFVKIVQAELESLMGAANEDLNLSAVPPAVVLMAGLQGAGKTTTAGKL 120

Query: 121 GKLLRTRHKKSVLVVSADVYRPAAIKQLETLATEVDVEFFPSDVSQKPIDIAKAAIAHAK 180
            + L+ R KKSV+VVSADVYRPAAIKQLE LA EV V FFPSD+SQKP+DIA AAI  AK
Sbjct: 121 ARFLKERKKKSVMVVSADVYRPAAIKQLEMLAGEVGVTFFPSDLSQKPVDIANAAIKEAK 180

Query: 181 LKFIDVVILDTAGRLHVDEAMMDEIKALHAALKPIETLFVVDAMTGQDAANTAKAFNEAL 240
           LKFIDVVI+DTAGRLH+DE MM EIKALHAA+ P+ETLFVVDAMTGQDAANTAKAF +AL
Sbjct: 181 LKFIDVVIVDTAGRLHIDEEMMGEIKALHAAINPVETLFVVDAMTGQDAANTAKAFGDAL 240

Query: 241 PLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGDV 300
           PLTGVILTKVDGDARGGAALS+R ITGKPIKF+G+GEK+DALEPFHP+RIASRILGMGDV
Sbjct: 241 PLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSDALEPFHPERIASRILGMGDV 300

Query: 301 LSLIEEVERGVDKEKAMKLASKVKQGGSFDLEDFREQLQQMKNMGGMMSMIEKLPGVG-- 358
           LSLIE+ E  +DK+KA KLA K+K+G  FDLEDFR+QLQQMKNMGG+  +++KLP +G  
Sbjct: 301 LSLIEQAEATLDKDKADKLAKKLKKGKGFDLEDFRDQLQQMKNMGGLGGLMDKLPNIGGV 360

Query: 359 QLPPDALAQIQDGKMTRQMEAIINSMTAKERKNPDLIKGSRKRRIAAGSGTEIQDVNRLL 418
            L     AQ    K  +QMEAIINSMT  ER++P+LI GSRKRRIA GSGT++QD+ RL+
Sbjct: 361 NLAQMGNAQGAAEKQFKQMEAIINSMTPAERRDPELISGSRKRRIAMGSGTQVQDIGRLI 420

Query: 419 KQFTQMQKMMKKMSAKGGMQKMMRGMRGMMPGG 451
           KQ  QMQKMMKK SAKGGM KMMRGM GM+PGG
Sbjct: 421 KQHKQMQKMMKKFSAKGGMAKMMRGMGGMLPGG 453