Pairwise Alignments

Query, 457 a.a., signal recognition particle protein Ffh (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 453 a.a., Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  692 bits (1786), Expect = 0.0
 Identities = 356/457 (77%), Positives = 403/457 (88%), Gaps = 4/457 (0%)

Query: 1   MFENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAV 60
           MF+NLTDRLSRTL+NISGRGRLTE+NVKETLREVRMALLEADVALPVVREF+N VKE+AV
Sbjct: 1   MFDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAV 60

Query: 61  GQEVAKSLSPGQAFIKIVQSELEKSMGEANQALDLATQPPAVVMMAGLQGAGKTTSVAKL 120
           G EV KSL+PGQ F+KIV+SEL  +MGE NQ L+LA QPPAVV+MAGLQGAGKTTSV KL
Sbjct: 61  GHEVNKSLTPGQEFVKIVRSELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKL 120

Query: 121 GKLLRTRHKKSVLVVSADVYRPAAIKQLETLATEVDVEFFPSDVSQKPIDIAKAAIAHAK 180
           GK LR +HKK VLVVSADVYRPAAIKQLETLA +V V+FFPSDV QKP+DI  AA+  AK
Sbjct: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180

Query: 181 LKFIDVVILDTAGRLHVDEAMMDEIKALHAALKPIETLFVVDAMTGQDAANTAKAFNEAL 240
           LKF DV+++DTAGRLHVDEAMMDEIK +HA++KP+ETLFVVDAMTGQDAANTAKAFNEAL
Sbjct: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIKPVETLFVVDAMTGQDAANTAKAFNEAL 240

Query: 241 PLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGDV 300
           PLTGV+LTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGDV
Sbjct: 241 PLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGDV 300

Query: 301 LSLIEEVERGVDKEKAMKLASKVKQGGSFDLEDFREQLQQMKNMGGMMSMIEKLPGVGQL 360
           LSLIE++E  VD+ +A KLA+K+K+G  FDL DF EQL+QMKNMGGM S++ KLPG+GQ+
Sbjct: 301 LSLIEDIESKVDRAQAEKLATKLKKGDGFDLNDFLEQLKQMKNMGGMASLMGKLPGMGQI 360

Query: 361 PPDALAQIQDGKMTRQMEAIINSMTAKERKNPDLIKGSRKRRIAAGSGTEIQDVNRLLKQ 420
           P +  +Q+ D K+  +MEAIINSMT KER  P++IKGSRKRRIA G G ++QDVNRLLKQ
Sbjct: 361 PDNVKSQMDD-KVLVRMEAIINSMTLKERAKPEIIKGSRKRRIAQGCGMQVQDVNRLLKQ 419

Query: 421 FTQMQKMMKKMSAKGGMQKMMRGMRGMMPGGMKFPGR 457
           F  MQ+MMKKM  KGGM KMMR M+GMMP G  FPGR
Sbjct: 420 FDDMQRMMKKMK-KGGMAKMMRSMKGMMPPG--FPGR 453