Pairwise Alignments

Query, 457 a.a., signal recognition particle protein Ffh (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 511 a.a., signal recognition particle protein from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  422 bits (1085), Expect = e-122
 Identities = 227/454 (50%), Positives = 310/454 (68%), Gaps = 5/454 (1%)

Query: 1   MFENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAV 60
           MFE L +RL+     I+GRG L+E++V E +REVR+ALLEADVALPVV+EF+    ERA 
Sbjct: 1   MFEALNERLTGVFDRITGRGALSEKDVAEAMREVRVALLEADVALPVVKEFIAFATERAT 60

Query: 61  GQEVAKSLSPGQAFIKIVQSELEKSMG-EANQALDLATQPPAVVMMAGLQGAGKTTSVAK 119
           G+EV +S+ P    +KIV   L + +G E    L+    PPAVV+MAGLQG+GKTT+ AK
Sbjct: 61  GEEVIRSVKPADQVVKIVYDGLIEMLGGEEPVPLNTNANPPAVVLMAGLQGSGKTTTSAK 120

Query: 120 LGKLLRTRHKKSVLVVSADVYRPAAIKQLETLATEVDVEFFPSDVSQKPIDIAKAAIAHA 179
           L   L    +K V++ S D  RPAA++QL TL  +++V   P    +  + I + A+  A
Sbjct: 121 LALRLTKFDRKKVMMASLDTRRPAAMEQLATLGKQIEVATLPIVAGESAVQITRRALQSA 180

Query: 180 KLKFIDVVILDTAGRLHVDEAMMDEIKALHAALKPIETLFVVDAMTGQDAANTAKAFNEA 239
           KL+  DV+ILDTAGR+ +DE +M+E+  +    KP+ETL V D++TGQDA  TAKAF+E 
Sbjct: 181 KLQGFDVLILDTAGRITLDEGLMNEVAEVADIAKPVETLLVADSLTGQDAVRTAKAFHER 240

Query: 240 LPLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGD 299
           LPLTG++LT+ DGD RGGA LS+R +TG PIK+LG GEK DAL+ F   R+A RILG GD
Sbjct: 241 LPLTGLVLTRADGDGRGGAMLSMRAVTGLPIKYLGAGEKVDALDVFDARRVAGRILGQGD 300

Query: 300 VLSLIEEVERGVDKEKAMKLASKVKQGGSFDLEDFREQLQQMKNMGGMMSMIEKLPGVGQ 359
           +++L+E+  + +D+ KA K+A K+ + G FDL+D   QLQQMK MGG+  ++  LPGV +
Sbjct: 301 IVALVEKASQDLDQAKAEKMARKLAK-GQFDLDDLAGQLQQMKRMGGLQGIMGMLPGVAK 359

Query: 360 LPPDALAQIQDGKMTRQMEAIINSMTAKERKNPDLIKGSRKRRIAAGSGTEIQDVNRLLK 419
           +         D +M  + EAII+SMT  ERK PDL+  SRK+RIAAG+G ++QDVNR+LK
Sbjct: 360 MKGQMAESGIDDRMILRQEAIISSMTKAERKKPDLLNASRKKRIAAGAGVDVQDVNRVLK 419

Query: 420 QFTQMQKMMKKMSAKGGMQKM--MRGMRGMMPGG 451
           Q  QM  ++K M A+GG +KM  M  M G + GG
Sbjct: 420 QHRQMADVVKSM-ARGGPKKMQQMAAMLGGLGGG 452