Pairwise Alignments

Query, 457 a.a., signal recognition particle protein Ffh (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 523 a.a., signal recognition particle protein from Agrobacterium fabrum C58

 Score =  426 bits (1094), Expect = e-123
 Identities = 231/461 (50%), Positives = 300/461 (65%), Gaps = 10/461 (2%)

Query: 1   MFENLTDRLSRTLKNISGRGRLTEENVKETLREVRMALLEADVALPVVREFVNNVKERAV 60
           MFENL DRL   L  ++GRG LTE +V   LREVR ALLEADVAL VVR F + V+E+AV
Sbjct: 1   MFENLQDRLGSILNGLTGRGALTEADVAAALREVRRALLEADVALEVVRSFTDRVREKAV 60

Query: 61  GQEVAKSLSPGQAFIKIVQSELEKSMGEANQALDLATQPPAVVMMAGLQGAGKTTSVAKL 120
           G  V KS+ PGQ  +KIV  EL + +G    ++DL    P V+MM GLQG+GKTT+  K+
Sbjct: 61  GAAVLKSIKPGQMVVKIVHDELVEMLGTEGVSIDLHAAAPVVIMMVGLQGSGKTTTTGKI 120

Query: 121 GKLLRTRHKKSVLVVSADVYRPAAIKQLETLATEVDVEFFPSDVSQKPIDIAKAAIAHAK 180
            K L  R KK VL+ S D  RPAA +QL  L  +  V+  P    Q P DIA  A+  AK
Sbjct: 121 AKRLTDRDKKKVLMASLDTRRPAAQEQLRQLGVQTGVDTLPIIAGQSPTDIAARAVQAAK 180

Query: 181 LKFIDVVILDTAGRLHVDEAMMDEIKALHAALKPIETLFVVDAMTGQDAANTAKAFNEAL 240
           L   DVVILDTAGR H+DE +M E+  +     P E L V D++TGQDA N A+ F+E +
Sbjct: 181 LGGHDVVILDTAGRTHIDEPLMLEMADIKKKSNPHEILLVADSLTGQDAVNLARNFDERV 240

Query: 241 PLTGVILTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGDV 300
            +TG++LT++DGD RGGAALS+R +TGKPIK +G+GE+ + L+ FHP RIA RILGMGD+
Sbjct: 241 GITGLVLTRMDGDGRGGAALSMRAVTGKPIKLIGIGERMNELDEFHPRRIADRILGMGDI 300

Query: 301 LSLIEEVERGVDKEKAMKLASKVKQGGSFDLEDFREQLQQMKNMGGMMSMIEKLPGVGQL 360
           +SL+E+    +D EKA  +A K+ + G FDL D  +QL QMK MGGM  ++  +PG+  +
Sbjct: 301 VSLVEKAAENIDAEKARSMAEKMAK-GKFDLNDLADQLGQMKKMGGMGGIMGLMPGMAGM 359

Query: 361 PPDALAQIQDGKMTRQMEAIINSMTAKERKNPDLIKGSRKRRIAAGSGTEIQDVNRLLKQ 420
                +   + KM  +  AII+SMT  ER NPD++K SRK+RIAAGSGT+  ++N+LLK 
Sbjct: 360 KDKMASAGMNDKMFDRQIAIISSMTKAERANPDILKHSRKKRIAAGSGTDAAEINKLLKM 419

Query: 421 FTQMQKMMKKM--SAKGGMQKMM-------RGMRGMMPGGM 452
              M  MMK M    KGG+ K M        G+ GMM GGM
Sbjct: 420 HRGMADMMKAMGGKGKGGIMKQMMGGLAGKMGLGGMMGGGM 460