Pairwise Alignments

Query, 262 a.a., membrane protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 263 a.a., ABC-type uncharacterized transport system, permease component from Kangiella aquimarina DSM 16071

 Score =  101 bits (251), Expect = 2e-26
 Identities = 80/258 (31%), Positives = 127/258 (49%), Gaps = 16/258 (6%)

Query: 12  YCIALVLVTSRLFHPQGPNRKAVAGIAAIAVVLHAAALSQAIFTTDGQNFSLTNVISLVN 71
           Y +  V    RL HP     +    +    + LH  AL  AI T  GQN SL N +SLV+
Sbjct: 11  YLVLAVFFILRLNHPDKEVPEWGKWLPLAPIALHLYALYLAIETGAGQNLSLFNTLSLVS 70

Query: 72  WIIAFTFTVMMFRLKVIVVVPVVYACSVLS-VALLWLLPPK-FIIHFELYPEVLAHVVLS 129
            I+     +  F  +   ++  +YAC     V+LL + P K  II  +       H+ LS
Sbjct: 71  LIMVLLIAIYRFNHQTPHLM--LYACLFAGFVSLLNIAPEKPNIIMLKGNSLAFWHIWLS 128

Query: 130 LMAYSALMIAALYAIQLAMIQNKLKKKQLMLSPSIPPLMTVEKQLYHLVIIGVILLSLSL 189
           ++ +S L+IA   +I L  +  KL+ +   + P +PPLM +E+ L  LV+ G+I L ++L
Sbjct: 129 VIGFSLLLIATFQSILLLFLHKKLRSRPASIHPLLPPLMQMEQFLSALVLSGIISLGVAL 188

Query: 190 ATGFIFLDDMFADGKGHKAILSIIAWFVYIAMLWQQYWVGCK------IRTAVIYTLTGA 243
             GF+  D        HK +LS +AWF +       +++G K      IR A +  +   
Sbjct: 189 ILGFMQPDTALRAQSLHKIVLSALAWFSFCT-----FYLGYKLSRLSGIRFARL-CIIAF 242

Query: 244 TLLSLAYFGARIVKELIL 261
            +L+L Y G+++V + IL
Sbjct: 243 VILALGYVGSKLVLDYIL 260