Pairwise Alignments

Query, 262 a.a., membrane protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 264 a.a., inner membrane protein YpjD from Dickeya dianthicola ME23

 Score =  204 bits (520), Expect = 1e-57
 Identities = 105/262 (40%), Positives = 169/262 (64%), Gaps = 2/262 (0%)

Query: 1   MVIFSASAMFFYCIALVLVTSRLFHPQGPNRKAVAGIAAIAVVLHAAALSQAIFTTD-GQ 59
           M +F+  A+  Y ++L L+   L    G  R+     A IA+V HA AL Q IF    GQ
Sbjct: 1   MSVFAIVALAAYFLSLGLIIPSLVRKNGAYRRLAVVSATIALVCHAVALYQRIFDVQIGQ 60

Query: 60  NFSLTNVISLVNWIIAFTFTVMMFRLKVIVVVPVVYACSVLSVALLWLLPPKFIIHFELY 119
           N SL N+ SL++ II    T++  R +   ++P++YA + +++A    +P +FI H E  
Sbjct: 61  NLSLLNIGSLISLIICTVMTIVASRNRGWFLLPIIYAFAFINLAFASFMPGEFITHLEAM 120

Query: 120 PEVLAHVVLSLMAYSALMIAALYAIQLAMIQNKLKKKQLMLSPSIPPLMTVEKQLYHLVI 179
           P ++ H+ L+L AY+ LMIAALYA+QLA++   LK K+L  +  +PPL+ +E++++H+  
Sbjct: 121 PGLMVHIGLALFAYATLMIAALYALQLALLDYMLKTKKLGFAADMPPLLGIERKMFHITQ 180

Query: 180 IGVILLSLSLATGFIFLDDMFADGKG-HKAILSIIAWFVYIAMLWQQYWVGCKIRTAVIY 238
           IGVILL+L+L TG I+++D+ ++ +  HKA+ S++AWFVYI +LW  Y  G + R  V +
Sbjct: 181 IGVILLTLTLCTGLIYMNDLLSNKENLHKALFSLLAWFVYILLLWGHYHEGWRGRRVVWF 240

Query: 239 TLTGATLLSLAYFGARIVKELI 260
            L GA LL+L+YFG+R+++  +
Sbjct: 241 NLIGALLLTLSYFGSRVIQNFL 262