Pairwise Alignments

Query, 1007 a.a., hypothetical TonB-dependent receptor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 962 a.a., Outer membrane cobalamin receptor protein from Kangiella aquimarina DSM 16071

 Score =  292 bits (747), Expect = 9e-83
 Identities = 277/1016 (27%), Positives = 446/1016 (43%), Gaps = 111/1016 (10%)

Query: 32   AVKENATRNETETADKNDGIEKVTVTGSRIKRDSFSLSTPLQGLDAKDIADSGIGSLADI 91
            AV    + N    A + +  E + VTGSRI++     + P+  L    + ++G  S+ DI
Sbjct: 18   AVLSAVSFNNAVLAAEEEEAESIVVTGSRIRQAQAEGANPVTVLGRDYLENTGAKSVGDI 77

Query: 92   LVDQIPALAEGVSSTNSQSSV---------QNTGLSTIDLRNLGTDRTLTLIDGRRVVSN 142
            L  ++P     +++  + S              G + + LR+L   RTL L+DG R V+ 
Sbjct: 78   LA-RLPTAGSALNTRFNSSGNFGFPPDGGGVGAGAAQVSLRHLKAKRTLVLVDGIRWVNG 136

Query: 143  SYSG---NYVSLSTIPAAMVDKVEIITGGASAVYGSDAIAGVVNIITQQNKTGFEINARG 199
            S      N V L+TIP +++D++EI+  GAS++YGSDAIAGVVNIIT+++  G E NA  
Sbjct: 137  SSGSGVSNSVDLNTIPISIIDRIEILEDGASSIYGSDAIAGVVNIITRKDFEGMEFNAYH 196

Query: 200  GETTEGGGRETTVDAGYGADFNSDKGYIYASATYDKQHGLFATDRERALYESSFAYDKKQ 259
            G   EG G  +  D  +GA  + DK  ++ S ++  Q  + + +RE +        +   
Sbjct: 197  GMFDEGDGETSQFDLAFGA--SGDKHRVFFSLSHFDQEAVDSLERELSAVPVP---NTGL 251

Query: 260  MCNTMNTADGYQCMRDITPEDWRERSNDIVGGRFKSNAWWYDGTEL---KTDFK--EERD 314
               +  T  G     D  P D   + ND+      +    YD +       DF      D
Sbjct: 252  TRGSSGTPQGRFVFID--PND---QVNDLTINNGVTGIPTYDLSNPGGPNDDFHVFTNND 306

Query: 315  GYNGYTTGLLKVPEDTLATAVKVNYDLSESVRANAQVQFSRNTAFRRTDAEGQDYNDAEL 374
             +N     L   P    +   + +Y LS++V    +  F+   +  R   E        L
Sbjct: 307  RFNFAAYNLYVTPSKRTSIFGQADYQLSDNVNFYTKALFNNRESVNRAAPE-------PL 359

Query: 375  YIDPITGLPGMIDAGSILANNPYIPAEIAATGGKSITWDRRFEEVGPVESDNERTTLRTW 434
            ++ P  G  G+ D  SI   NPY P          I   RR  E GP        T+   
Sbjct: 360  FLGPDAGTGGLADTVSIHETNPYNPFGFTLDENNLIFIGRRPLEGGPRVFKQNVDTVYVG 419

Query: 435  AGLQGDLF---ETWTWDASVGYGQFEQRQRRSNEISIRRLRNALNAVYAADGVTIQCASE 491
             GL GD      ++ WD +  +G+ E +Q      +IR ++NAL  +           ++
Sbjct: 420  FGLNGDFAAGNNSYFWDINYTHGKNEAKQTTYGSYNIRHIKNALGPL-----------AD 468

Query: 492  AARAEGCVPVNIFG-----EGSISKEGADYIRANPYINTDITQFNALGYISGELFELPAG 546
                EGCVP+NIFG      G+I++E  DYI+      ++         ISG+LFE+PAG
Sbjct: 469  CQALEGCVPLNIFGGQGDGSGTITQEMLDYIQPVMTDQSENVIDTLSANISGDLFEMPAG 528

Query: 547  GVQSAFGMEYRRDTQAVDTDKAMRGDAITFNDVP--PFEGDVTVWEAFGEANLPLLRDMS 604
                A G+E R  +     D  +   A   N VP  P  G   V E + E  +PLL+DM+
Sbjct: 529  YFAFAAGVETREYSGFYQPDAIVV--AGNSNGVPSTPTSGSYDVDEYYAEFKVPLLKDMA 586

Query: 605  FANKLDVDVSLRLADYSQKNIDLMSSYRTGILWEPIANYALRANYSRSQRAPNITEL-IS 663
             A +L + ++ R +DYS    +  + +  G+LW       LRA+ S   RAP+I EL +S
Sbjct: 587  AAEELTLTMAARNSDYSTFGSETTTKF--GLLWRVTDELVLRASQSEGFRAPSIGELFVS 644

Query: 664  PPRGDYDSIRDICNGVTATSTGAGHDSCRLDPGIAVAIASTGTFKAETGSKYSPNAGNEN 723
              R D + + D C+    T       +C+        +    T++           GN +
Sbjct: 645  DSRFD-EPLTDRCSNYLGTQY---EFNCQ-------TLGVPDTYQQINQQVSVITGGNPD 693

Query: 724  LTEETADTYTLGFTMAPAF------LEGFNLAVDYYDIKVADAIGSLSNEDILAECYNSS 777
            L  E +D+   GF  +PA+      +  F++   YY  +V DAI     +  + +C   +
Sbjct: 694  LDAEKSDSSMFGFVYSPAWVNNIDWMNSFDIKGTYYSHEVRDAIEPEDAQFKIDQCV--A 751

Query: 778  NPYGAGNEYCQDITRDTEGQITQVIQQELNLNDIVTRGIDFAMAYEWELADYGELSLNTN 837
            NP  +   YC DITR   G I+ +  + +N+  I T G D   +Y     D+G LS+N +
Sbjct: 752  NPTSS---YCDDITRTAGGTISSIDNRLVNIGTIDTSGYDITFSYASPQYDWGRLSVNWS 808

Query: 838  WTHVLEYSSSYYGADG--LVAEDYVGELTSGIFEDRGTLSLTWSNDDWRVRWSAKYKSAM 895
             T V EY       DG  LV ++   +  +GI E + ++++ W+ +DW V W+ ++  ++
Sbjct: 809  NTFVNEYVE-----DGRELVGKE---QNNTGIPEWKSSMNIGWALEDWAVNWTVRHVDSL 860

Query: 896  VDSHDRVEEWNVLKAENQAKLDAGDASAVANPETPEFLFYGSYIT----HDLSVSYTMDV 951
             +S       + L     +    G  S   NP T +     + +      D+ VSY  +V
Sbjct: 861  TESCS-----DFLDGTPDSLTALGLCS---NPNTADESLSTNKLDATTYSDIQVSYFPEV 912

Query: 952  SQAELRLYGGLRNIFDNQGPWVADGGDLIETGTGNYSSAYGGGVGRYAYLGAELKF 1007
               ++ L  G+ N F+   P               Y  +     G ++YL  ++KF
Sbjct: 913  DGVDMELTFGINNAFNANPP------ACYSCSLNGYDPSVYDPEGSFSYLSVKMKF 962