Pairwise Alignments

Query, 1007 a.a., hypothetical TonB-dependent receptor (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 963 a.a., TonB-dependent receptor from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  304 bits (779), Expect = 2e-86
 Identities = 287/1037 (27%), Positives = 461/1037 (44%), Gaps = 161/1037 (15%)

Query: 46   DKNDGIEKVTVTGSRIKRDSFSLSTPLQGLDAKDIADSGIGSLADILVDQIPALAEGVSS 105
            D+   + ++ VTGSRI R  +  ++P+  + A+D   +G  ++ D L++ +P     +SS
Sbjct: 13   DQATDVGEIVVTGSRIARQDYRSTSPIVTVTAQDFQATGSVTI-DTLINDLPQFTPSISS 71

Query: 106  TNSQSSVQNTGLSTIDLRNLGTDRTLTLIDGRRVVSNSYSGNYVSLSTIPAAMVDKVEII 165
            T++  S  N G + I+LRNLG++RTL L++GRRVV ++  G+ V ++ IP A++  +E+I
Sbjct: 72   TSNNPS--NGGQANINLRNLGSNRTLVLMNGRRVVPSNSDGS-VDVNLIPTALIKNIEVI 128

Query: 166  TGGASAVYGSDAIAGVVNIITQQNKTGFEINARGGETTEGGGRETTVDAGYGADFNSDKG 225
            +GGASA YGSDA+AGV N I  +N +G +++A+ GET    G+  +     G +F+ D+G
Sbjct: 129  SGGASAAYGSDALAGVANFILDENFSGVQVDAQYGETDRSDGKTESYSVTVGGNFDDDRG 188

Query: 226  YIYASATYDKQHGLFATDRERALYESSFAYDKKQMCNTMNTADGYQCMRDITPEDWRER- 284
             +  S     +  +F   R+ +            + +T+  ++    +  +         
Sbjct: 189  NMVLSLGRSTRDVIFNAARDFSAVSGPSG--TSPLGSTIFDSNNLPSLAAVRAYFGNATL 246

Query: 285  -SNDIVGGRFKSNAWWYDGTELKTDFKEERDGYNGYTT------------GLLKVPEDTL 331
             +    G    ++ + Y G   K +FK    G   YT               L++P D  
Sbjct: 247  ANTGAFGFNEDNSLFSYTG---KLNFKVPPGGGAEYTAPGANYTFNTGPLNYLQLPLDRY 303

Query: 332  ATAVKVNYDLSESVRANAQVQFSRNTAFRRTDAEGQDYNDAELYIDPITGLPGMIDAGSI 391
                   Y ++++    A   F+            Q   D EL   P     G      +
Sbjct: 304  NVYGGGRYKINDNAEVYANALFT------------QYQGDTELAASPAASSTGF----RV 347

Query: 392  LANNPYIPAEIA------ATGGKSITWDRRFEEVGPVESDNERTTLRTWAGLQGDLFE-T 444
             A NP+I A++       A    S   ++RF  +G   S  E    +   G++G + + T
Sbjct: 348  PATNPFITADLRTLLNARANPNGSFLLNKRFTALGGRHSIEEYNIYQITTGVRGQVPQST 407

Query: 445  WTWDASVGYGQFEQRQRRSNEISIRRLRNALNAVYAADGVTIQCASEAARAEGCVPVNIF 504
            WT+D    YG+      ++  +S   ++  L+A   ADG    CA       G  P   F
Sbjct: 408  WTYDVYGSYGRVSNTTTQTGNVSRSSVQRLLDA---ADGGRSLCAG------GFDP---F 455

Query: 505  GEGSISKEGADYIRANPYINTDITQFNALGYISGELFELPAGGVQSAFGMEYRRDTQAVD 564
            G  ++S E   YI  +   +T   Q      + G+ F+LPAG V+ A G +YR+D  A  
Sbjct: 456  GVTALSAECVSYIGRSARNSTVTEQRVIEASLQGKAFDLPAGEVRVALGAQYRQDDFAFG 515

Query: 565  TDKAM-RGDAIT---------------------FNDVPPFEGDVTVWEAFGEANLPLLRD 602
             D ++ + +A+T                     FN  P   G     E F EA +PLL D
Sbjct: 516  ADSSLAQQNAVTPHLGANGQPDGGNIGGSEIAGFNPTPSLSGGTNSKELFIEALVPLLSD 575

Query: 603  MSFANKLDVDVSLRLADYSQKNIDLMSSYRTGILWEPIANYALRANYSRSQRAPNITELI 662
            + F  +LD+++  R ADYS        +YR  + W        R  YSRS RAP+I EL 
Sbjct: 576  LPFVEQLDLNLGYRYADYSTAGGT--QAYRAELDWTVAGGLRARGGYSRSVRAPSIGELF 633

Query: 663  SPPRGDYDSIRDICNGVTATSTGAGHDSCRLDPGI----------AVAIASTGTFKAETG 712
            +    ++ SI         ++TG G D C +              A+ +A   + +A   
Sbjct: 634  ATASTNFPSIG------APSATGTGGDPCDIRSSFRQGSNAAAVRALCLAQGISPQAIDQ 687

Query: 713  SKYSPN------AGNENLTEETADTYTLGFT----MAPAFLEGFNLAVDYYDIKVADAIG 762
              +S N       GN NL EET+D+++ G       A  +L GF+ ++DYY+I++ DAIG
Sbjct: 688  YTFSNNQVESRTGGNPNLFEETSDSWSAGLVYQSQFASPWLSGFSASIDYYNIEITDAIG 747

Query: 763  SLSNEDILAECYN--SSNP-YGAGNEYCQDITRD-TEGQITQVIQQELNLNDIVTRGIDF 818
            S++ +D LA C+N    NP +   N YCQ  +RD   G IT  I+ + NL  I T G+DF
Sbjct: 748  SIAADDSLAGCFNVTGENPTFSNANSYCQLFSRDPLSGNITGAIENQANLGMIRTSGVDF 807

Query: 819  AMAYEWELA-----DYGELSLNTNWTHVLEYSSSYYGADGLVAEDYVGELTSGIFEDR-G 872
               + + +A     D+G L  NT    V+ +  +Y        ED V E   G F DR G
Sbjct: 808  QADWAFNIADIGGGDWGRLKFNT----VISWLENY--------EDNVVE--GGAFTDRTG 853

Query: 873  TLSLTWSN--DDWRVRWSAKYKSAMVDSHDRVEEWNVLKAENQAKLDAGDASAVANPETP 930
            T+  ++ N   +W+   S  + S       R   W             G+ + +   E  
Sbjct: 854  TIDSSFGNTFPEWKALTSVTWASGPFSVGAR---WR----------RVGEITVINTTEVL 900

Query: 931  EFLFYGSYITHDLSVSYTMDVSQAELRLYGGLRNIFDNQGPWVADGGDLIETGTGNYSSA 990
              + Y      DL+ S++++ +   + L GG+ N+ D Q P V   G    T    Y   
Sbjct: 901  PSIDY-----FDLNGSWSINDT---VSLRGGVNNLTDEQ-PNVFVPGVQANTDPSTYDV- 950

Query: 991  YGGGVGRYAYLGAELKF 1007
                +GR  Y+G   KF
Sbjct: 951  ----LGRRYYVGLTAKF 963