Pairwise Alignments

Query, 574 a.a., DNA primase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 581 a.a., DNA primase from Escherichia coli BL21

 Score =  547 bits (1409), Expect = e-160
 Identities = 292/578 (50%), Positives = 393/578 (67%), Gaps = 22/578 (3%)

Query: 3   IPRDFINELIARTDIVELIDRKVPLKKAGKNYSACCPFHSEKSPSFTVSRDKQFYHCFGC 62
           IPR FIN+L+ARTDIV+LID +V LKK GKN+ ACCPFH+EK+PSFTV+ +KQFYHCFGC
Sbjct: 5   IPRVFINDLLARTDIVDLIDARVKLKKQGKNFHACCPFHNEKTPSFTVNGEKQFYHCFGC 64

Query: 63  GAHGNAIDFVMEYDRLDFVDAIEDLAGQLGLEVPREQGTGKRQDDGLSRD-LYQLMEEAS 121
           GAHGNAIDF+M YD+L+FV+ +E+LA    LEVP E G+G  Q +   R  LYQLM+  +
Sbjct: 65  GAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQLMDGLN 124

Query: 122 RFFQTQLRQHQDKQKVIDYLAYRGLSDDIVEHFGIGFAPDGWDGLLSRYRQNQDAQDKLL 181
            F+Q  L+Q         YL  RGLS +++  F IGFAP GWD +L R+  N + +  L+
Sbjct: 125 TFYQQSLQQ-PVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLI 183

Query: 182 TAGMLISNDSGKRYDRFRDRLMFPIRDRRGRVIGFGGRVLGDGTPKYLNSPETPIFHKGN 241
            AGML++ND G+ YDRFR+R+MFPIRD+RGRVIGFGGRVLG+ TPKYLNSPET IFHKG 
Sbjct: 184 DAGMLVTNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGNDTPKYLNSPETDIFHKGR 243

Query: 242 ELYGLYELKQRHRDPDKVLIVEGYMDVVALAQYGVDYAVASLGTSTTAEQFQLLLRSAKE 301
           +LYGLYE +Q + +P+++L+VEGYMDVVALAQYG++YAVASLGTSTTA+  QLL R+   
Sbjct: 244 QLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADHIQLLFRATNN 303

Query: 302 VICCYDGDRAGNEAAWRALETALPLLKPGDKVRFMFLPQSEDPDSMVRKIGKDPFEQLME 361
           VICCYDGDRAG +AAWRALETALP +  G ++RFMFLP  EDPD++VRK GK+ FE  ME
Sbjct: 304 VICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEARME 363

Query: 362 SAITLPEFLFDTLATKFGTD----KGNLAKQAFGLIEKIQDTVLQNLLLENLAHKLGMNS 417
            A+ L  FLF++L  +        +  L+  A  LI ++    L+  L + L +KLG+  
Sbjct: 364 QAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGILD 423

Query: 418 SDD----MKKKLGFTVKQPKPTASTGLKGRGTPLRLAIALLVQHPELGVGLSPQPALNHL 473
                  M K     V +P P        + T +R+ I LLVQ+PEL   + P   L+  
Sbjct: 424 DSQLERLMPKAAESGVSRPVPQL------KRTTMRILIGLLVQNPELATLVPPLENLDEN 477

Query: 474 QMPGIDLL-PLLLALTREHRLNSAQLLEQFRDSPHSGTLHKLAQWDHQVAEENQLEK-FK 531
           ++PG+ L   L+     +  L + QLLE +R + ++ TL KL+ WD  +A++N  E+ F 
Sbjct: 478 KLPGLGLFRELVNTCLSQPGLTTGQLLEHYRGTNNAATLEKLSMWD-DIADKNIAEQTFT 536

Query: 532 QTLVWLNNQYIEQRYQEL-SLKQTH--TKEEKIQLQKL 566
            +L  + +  +E R +EL + ++TH  + EE+++L  L
Sbjct: 537 DSLNHMFDSLLELRQEELIARERTHGLSNEERLELWTL 574