Pairwise Alignments

Query, 301 a.a., polyamine ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 306 a.a., spermidine/putrescine ABC transporter permease from Pseudomonas simiae WCS417

 Score =  409 bits (1051), Expect = e-119
 Identities = 201/299 (67%), Positives = 241/299 (80%), Gaps = 2/299 (0%)

Query: 2   KIKSKLKWL--KGRFWTISFPYAWLLLFFALPFAIVFKISLSTAAIAIPPYEATFQYADD 59
           K+K +L+ +   GR   I  P+ WL LFF LPF IV KIS + A +AIPPY   + + + 
Sbjct: 5   KLKRRLQRITPSGRHAVIGIPFLWLFLFFMLPFFIVLKISFAEADVAIPPYTEIYTFVEQ 64

Query: 60  VLNIFLHLGNYLMLLDDPLYYTAYLSSLKMALVSTIGCLIIGYPMAYAIARAPARWQTVL 119
            L + L+LGNY ML DD LY  AYL SLKMA  ST+ CL+IGYPMAYAIA A    QTVL
Sbjct: 65  KLQLVLNLGNYAMLGDDELYIAAYLGSLKMAFFSTLLCLLIGYPMAYAIASARKEMQTVL 124

Query: 120 LLLVMLPSWTSFLIRVYAWMGILSNTGIINNSLMWLGIISEPLQILNTNIAVYIGIIYAY 179
           +LL+M+P+WT+ LIRVYAWMGILSN G++N  LM +G+I+EPLQILNTNIAVYIG++Y+Y
Sbjct: 125 VLLIMMPTWTAILIRVYAWMGILSNNGLLNGFLMSMGLINEPLQILNTNIAVYIGVVYSY 184

Query: 180 LPFMILPLYATLVKLDMSLIEAASDLGSSRINTFWKITFPLSKSGVIAGSMLVFIPAVGE 239
           LPFMILPLYA LVK D SL+EAASDLGSS  N+FWKIT PLSK+G+IAG MLVFIP VGE
Sbjct: 185 LPFMILPLYANLVKHDQSLLEAASDLGSSTFNSFWKITVPLSKNGIIAGCMLVFIPVVGE 244

Query: 240 FVIPELLGGPDSLMIGKVLWQEFFNNRDWPVASSLAIVMLVLLIIPITLFHRYQARSLE 298
           FVIPELLGGP++LMIGKVLWQEFFNNRDWPVAS+LA+VML +LI+PI LF+R QA+ +E
Sbjct: 245 FVIPELLGGPETLMIGKVLWQEFFNNRDWPVASALAVVMLAILIVPIILFNRSQAKEME 303