Pairwise Alignments

Query, 301 a.a., polyamine ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 303 a.a., Putrescine transport system permease protein PotH (TC 3.A.1.11.2) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  305 bits (782), Expect = 7e-88
 Identities = 155/296 (52%), Positives = 203/296 (68%), Gaps = 10/296 (3%)

Query: 12  GRFWTISFPYAWLLLFFALPFAIVFKISLSTAAIAIPPYEATFQYADDVLNIFLHLGNYL 71
           G+ + I  PY WL+LFF LPF I+  IS       I P++  +     +L+  L   NYL
Sbjct: 9   GKRFVIGVPYGWLILFFFLPFLILLYISFVDMGGDISPFKPIWDPVSGILS--LKYENYL 66

Query: 72  ML--------LDDPLYYTAYLSSLKMALVSTIGCLIIGYPMAYAIARAPARWQTVLLLLV 123
            +        L   LY  AYL S+  AL + + CL IGYP AY IAR+PA  +  LLL+V
Sbjct: 67  AIFRTEEGAPLFRTLYIDAYLRSIWYALCTAVLCLAIGYPFAYFIARSPASIRPALLLMV 126

Query: 124 MLPSWTSFLIRVYAWMGILSNTGIINNSLMWLGIISEPLQILNTNIAVYIGIIYAYLPFM 183
           MLP WTSFL+RVYAW GIL++ G++N  LM +G+ISEP+ +L TN+++ IG+ Y YLPFM
Sbjct: 127 MLPFWTSFLLRVYAWKGILADQGVLNRLLMSIGLISEPIPMLYTNVSMLIGMTYVYLPFM 186

Query: 184 ILPLYATLVKLDMSLIEAASDLGSSRINTFWKITFPLSKSGVIAGSMLVFIPAVGEFVIP 243
           ILPLYA LVK+D  L+EAA DLG+S    FW IT PLSK+G+IAG MLVFIP VGEFVIP
Sbjct: 187 ILPLYANLVKMDFRLLEAAYDLGTSPFKAFWLITVPLSKAGIIAGFMLVFIPCVGEFVIP 246

Query: 244 ELLGGPDSLMIGKVLWQEFFNNRDWPVASSLAIVMLVLLIIPITLFHRYQARSLEK 299
            LLGGP++LMIG+V+W E F   DWP A++LA+VM+ L++IP+ L++ Y +   EK
Sbjct: 247 SLLGGPENLMIGRVVWDEMFTANDWPRATALAVVMIALIVIPLALYYHYSSDPAEK 302