Pairwise Alignments

Query, 301 a.a., polyamine ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 316 a.a., putrescine ABC transporter permease PotH from Magnetospirillum magneticum AMB-1

 Score =  353 bits (907), Expect = e-102
 Identities = 179/298 (60%), Positives = 222/298 (74%), Gaps = 2/298 (0%)

Query: 2   KIKSKLKWLKGRFWTISFPYAWLLLFFALPFAIVFKISLSTAAIAIPPYEATFQYADDVL 61
           ++K+ L+   GRF     PYAWLLLFF +PF IV KISLS   + IPPY     +A+   
Sbjct: 19  QMKTLLEGRGGRFLVGLAPYAWLLLFFLVPFLIVLKISLSEPQMGIPPYMPLIDWAEGAF 78

Query: 62  NIFLHLGNYLMLLDDPLYYTAYLSSLKMALVSTIGCLIIGYPMAYAIARAPARWQTVLLL 121
              L    Y  LL D LY  AYL SLK+A +ST+GCL++GYP AYAIARAP   +  LL+
Sbjct: 79  KGTL--AGYNTLLGDNLYLLAYLGSLKLAGISTLGCLLLGYPAAYAIARAPQSRRQALLM 136

Query: 122 LVMLPSWTSFLIRVYAWMGILSNTGIINNSLMWLGIISEPLQILNTNIAVYIGIIYAYLP 181
           LV LP WTSFLIRVYAW+GIL N G++N +L  LG+ISEPLQIL T+ AV IG++Y+YLP
Sbjct: 137 LVALPFWTSFLIRVYAWIGILKNEGLLNMALQALGLISEPLQILETSTAVVIGMVYSYLP 196

Query: 182 FMILPLYATLVKLDMSLIEAASDLGSSRINTFWKITFPLSKSGVIAGSMLVFIPAVGEFV 241
           FMILPLYATL K+D+SL+EAA+DLG      F  +T PLS  GVIAG MLVFIPAVGEFV
Sbjct: 197 FMILPLYATLEKMDLSLLEAAADLGCRPFKAFLAVTLPLSMPGVIAGCMLVFIPAVGEFV 256

Query: 242 IPELLGGPDSLMIGKVLWQEFFNNRDWPVASSLAIVMLVLLIIPITLFHRYQARSLEK 299
           IP+LLGGPD+L+IGKVLW EFF+NRDWP AS++A+ MLVLL++PI +F  ++A+  E+
Sbjct: 257 IPDLLGGPDTLVIGKVLWAEFFDNRDWPTASAVAVAMLVLLVVPIMVFQHFEAKRQER 314