Pairwise Alignments

Query, 301 a.a., polyamine ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 287 a.a., Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  218 bits (554), Expect = 2e-61
 Identities = 108/269 (40%), Positives = 174/269 (64%), Gaps = 13/269 (4%)

Query: 23  WLLLFFALPFAIVFKISLSTAAIAIPPYEATFQYADDVLNIFLHLGNYLMLLDDPLYYTA 82
           WL+LF  LP  ++   S  T        +A+F      + +   L NY  LLD PLY+  
Sbjct: 18  WLVLFVFLPNLMIIGTSFLTRD------DASF------VKMVFTLDNYARLLD-PLYFEV 64

Query: 83  YLSSLKMALVSTIGCLIIGYPMAYAIARAPARWQTVLLLLVMLPSWTSFLIRVYAWMGIL 142
            L SL MAL++T+ CL++GYP A+ +A+ P + + +LL L+++P WT+ LIR+Y     L
Sbjct: 65  LLHSLNMALIATLSCLVLGYPFAWFLAKLPEKIRPLLLFLLIVPFWTNSLIRIYGLKIFL 124

Query: 143 SNTGIINNSLMWLGIISEPLQILNTNIAVYIGIIYAYLPFMILPLYATLVKLDMSLIEAA 202
           S  G +N  L+WLG+I  P++I+ T  AV IG++Y  LPFM++PLY+++ KLD  L+EAA
Sbjct: 125 STKGYLNEFLLWLGVIDTPIRIMFTPSAVIIGLVYILLPFMVMPLYSSIEKLDKPLLEAA 184

Query: 203 SDLGSSRINTFWKITFPLSKSGVIAGSMLVFIPAVGEFVIPELLGGPDSLMIGKVLWQEF 262
            DLG+S++ TF +I  PL+  G++AG +LV +PA+G F + +L+GG  +L+IG V+  +F
Sbjct: 185 RDLGASKMQTFIRIIIPLTMPGIVAGCLLVMLPAMGLFYVSDLMGGAKNLLIGNVIKVQF 244

Query: 263 FNNRDWPVASSLAIVMLVLLIIPITLFHR 291
            N RDWP  ++ +I + +++ + + ++ R
Sbjct: 245 LNIRDWPFGAATSITLTIVMGLMLLIYWR 273