Pairwise Alignments

Query, 301 a.a., polyamine ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 275 a.a., spermidine/putrescine ABC transporter permease from Escherichia coli BL21

 Score =  218 bits (554), Expect = 2e-61
 Identities = 109/269 (40%), Positives = 174/269 (64%), Gaps = 13/269 (4%)

Query: 23  WLLLFFALPFAIVFKISLSTAAIAIPPYEATFQYADDVLNIFLHLGNYLMLLDDPLYYTA 82
           WL+LF  LP  ++   S  T        +A+F      + +   L NY  LLD PLY+  
Sbjct: 8   WLVLFVFLPNLMIIGTSFLTRD------DASF------VKMVFTLDNYTRLLD-PLYFEV 54

Query: 83  YLSSLKMALVSTIGCLIIGYPMAYAIARAPARWQTVLLLLVMLPSWTSFLIRVYAWMGIL 142
            L SL MAL++T+ CL++GYP A+ +A+ P + + +LL L+++P WT+ LIR+Y     L
Sbjct: 55  LLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFL 114

Query: 143 SNTGIINNSLMWLGIISEPLQILNTNIAVYIGIIYAYLPFMILPLYATLVKLDMSLIEAA 202
           S  G +N  L+WLG+I  P++I+ T  AV IG++Y  LPFM++PLY+++ KLD  L+EAA
Sbjct: 115 STKGYLNEFLLWLGVIDTPIRIMFTPSAVIIGLVYILLPFMVMPLYSSIEKLDKPLLEAA 174

Query: 203 SDLGSSRINTFWKITFPLSKSGVIAGSMLVFIPAVGEFVIPELLGGPDSLMIGKVLWQEF 262
            DLG+S++ TF +I  PL+  G+IAG +LV +PA+G F + +L+GG  +L+IG V+  +F
Sbjct: 175 RDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLMGGAKNLLIGNVIKVQF 234

Query: 263 FNNRDWPVASSLAIVMLVLLIIPITLFHR 291
            N RDWP  ++ +I + +++ + + ++ R
Sbjct: 235 LNIRDWPFGAATSITLTIVMGLMLLVYWR 263