Pairwise Alignments

Query, 301 a.a., polyamine ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 302 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

 Score =  323 bits (829), Expect = 2e-93
 Identities = 157/287 (54%), Positives = 207/287 (72%), Gaps = 4/287 (1%)

Query: 13  RFWTISFPYAWLLLFFALPFAIVFKISLSTAAIAIPPYEATFQYADDVLNIFLHLG--NY 70
           R+  ++ PY WLLLFFA PF I+ KISLS  AI++PPY   F+    +   F  L   NY
Sbjct: 14  RWLVVAVPYFWLLLFFAAPFLIIVKISLSDTAISMPPYTPVFEGFSKLGEFFSQLDFENY 73

Query: 71  LMLLDDPLYYTAYLSSLKMALVSTIGCLIIGYPMAYAIARAPARWQTVLLLLVMLPSWTS 130
           L L +DPLY  AYLSSL++A +ST   L+IGYPMA A+ARAP+  +  L++LV+LP WTS
Sbjct: 74  LFLTEDPLYIEAYLSSLRIAFISTFLLLLIGYPMALAMARAPSSVRPTLVMLVILPFWTS 133

Query: 131 FLIRVYAWMGILSNTGIINNSLMWLGIIS--EPLQILNTNIAVYIGIIYAYLPFMILPLY 188
           FLIRVYAW+GIL   G++     WLG +   + + I  T  A++IGI+Y+YLPFM+LPLY
Sbjct: 134 FLIRVYAWIGILKPEGLLTVLFQWLGFLGPDQQVNIFRTETAIFIGIVYSYLPFMVLPLY 193

Query: 189 ATLVKLDMSLIEAASDLGSSRINTFWKITFPLSKSGVIAGSMLVFIPAVGEFVIPELLGG 248
           + L KLD +L+EAA+DLG      FWKITFPLS  GV+AG+M+ FIP  GEFVIP+LLGG
Sbjct: 194 SALEKLDNTLLEAAADLGCPPWKAFWKITFPLSLPGVVAGAMICFIPITGEFVIPDLLGG 253

Query: 249 PDSLMIGKVLWQEFFNNRDWPVASSLAIVMLVLLIIPITLFHRYQAR 295
             +LMIGK LW EFF NRDWP+AS++A+++L+LL++PI +F   Q +
Sbjct: 254 AQTLMIGKTLWTEFFGNRDWPLASAVAVLLLILLVVPIAIFQNQQKK 300