Pairwise Alignments

Query, 301 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 298 a.a., LysR family transcriptional regulator from Agrobacterium fabrum C58

 Score = 68.6 bits (166), Expect = 2e-16
 Identities = 71/293 (24%), Positives = 126/293 (43%), Gaps = 29/293 (9%)

Query: 7   LKTFVTLAECKHFGKAAAALHMTQPNVSLHIKQLEQNTRVKLIERNPFRL--TQAGFRLL 64
           L+ F  + E + F +AA ALH++QP ++  I++LEQ     L+ER    +  T  G  ++
Sbjct: 10  LRAFQAVVELESFHRAADALHISQPALTRRIQKLEQAIGAPLLERTTRHVAPTAMGQEVM 69

Query: 65  ESSQKTLMELQVCQADLNAINDLSQ--GTLTIAASDIISRLLLIQPFQLFKAEFPGIDFS 122
              ++ L E       L A+ D +Q  G +T+A     +   L    + F  ++P I   
Sbjct: 70  PLVRRMLEEF---DGSLFAMKDGAQRRGLITMACVPTAAFYFLPTVIKTFSKQYPHIRLR 126

Query: 123 LLNTTSFQASELVTNAEADLGFVIAQKESQPLHFTELQQIKWCALGNNLALWQQSQGRDD 182
           + + T+ +  + V   E + G  +       L F  L    +      LA+      R D
Sbjct: 127 IRDLTANEGLQAVARGEVEFGINLMGNSDPDLAFEPLIDDPFV-----LAM------RKD 175

Query: 183 MPLA----------EQPTLILLGHDTRTRELLDPALPSLNLPRYRIMEVGSVDAQIDWAE 232
            PLA          E   L+++   +  R LLD AL   NL      EV  ++  +   E
Sbjct: 176 HPLAAFETIQWDQLEPHPLVVVDRSSGNRTLLDGALARHNLKLNWFYEVTHLNTSLGLVE 235

Query: 233 AGFGVAIVPEFSIYTKTNLKSKITPLPQ-FPSTSLGYIVRQNQILSKAIKQLL 284
           AG G++++P  +     +      P+     S ++G + R++  LS A ++ +
Sbjct: 236 AGLGISVLPRLATPQDEHPFLVTRPIVNPVVSRTIGIVQRRSSALSPAAEKFV 288