Pairwise Alignments

Query, 509 a.a., cyclic nucleotide phosphodiesterase, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 865 a.a., hypothetical protein from Sphingobium sp. HT1-2

 Score =  214 bits (545), Expect = 1e-59
 Identities = 140/418 (33%), Positives = 221/418 (52%), Gaps = 18/418 (4%)

Query: 83  DKLTGLINRVGLKRTLASLMPITQG-----TLVLIDIYRFRYVNDLLGFVFGDILLKQFA 137
           D LTGL NRV + + L   +  ++G      L+++D+ RF+ VND LG   GD LL+Q +
Sbjct: 344 DSLTGLANRVQMLQALEQAVLGSRGKQGECALMMLDLDRFKSVNDTLGHPAGDALLRQVS 403

Query: 138 ERLTSLSLKPKLIARLNGDEFFLYYEQSLSQEQLLHLR----GRLQVPFNIKDTPVSVRL 193
           +RL  +     L+ R  GDEF +       + +L  L       L  P++I+ T V + +
Sbjct: 404 QRLQRVVGNQGLVGRQGGDEFKVLVHGRHDRNRLGLLAQAIISALSQPYSIEGTGVVIGV 463

Query: 194 QIGCLQLAQHHADVSNMLRRLDLALKKARSTRIAIACYSEND---DIRQLRELKIIDSLP 250
            IG     +       ++R  DLAL KA+     +  +   D   D    R+L+    L 
Sbjct: 464 SIGISFCPEDGVTADALIRNADLALYKAKGDGRGVYRFYSADMHADAEDRRQLE--QDLR 521

Query: 251 NGLQRNHLYMVYQPKQDVSSEGCTQVEALIRWEHEELGVISPGEFIPLAECAGMIDLVSH 310
           + L  + L++VYQP    ++E  T  EAL+RW+H   G ISP  F+P+AE +G+I  +  
Sbjct: 522 HALTADGLHLVYQPIVSSTTERITGYEALLRWDHPVRGAISPALFVPIAEDSGLIAPIGE 581

Query: 311 WALEQVLQQQVKWRLAGISVCVALNLSTRDLDSETLPHELDARLKHYQLPPECLMIEITE 370
           W +    +   +W  AGI V  A+N+S     +   P  +   L   QL PE L +EITE
Sbjct: 582 WVMRTACRDAAQWD-AGIRV--AVNVSAMQFANPGFPTTVMQALASAQLAPERLELEITE 638

Query: 371 STLMADLNKAVDTLVQIRRLGIHLAIDDFGTGHSSLAYLKHLPANEVKIDKVFLQDLK-P 429
           S  + D +       +++ LG+ L +DDFGTG+SSL YLK  P +++KID+ F++     
Sbjct: 639 SVFLNDNDGTDAMFTRLKGLGVRLVLDDFGTGYSSLGYLKKAPFDKIKIDQSFVRGAAIR 698

Query: 430 NQPSEYILEASVNIAKKLGYEVTVEGVETQEVRDLLVKMGVDRIQGLCYAKPMRAVEL 487
              +  I++A V++A+ LG + T EG ET++  DL+ ++G   IQG  Y +PM A ++
Sbjct: 699 GSRNSAIIKAIVSLAEALGMDTTAEGAETRDELDLIRQLGCSHIQGYIYGRPMPAAQV 756