Pairwise Alignments

Query, 509 a.a., cyclic nucleotide phosphodiesterase, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 693 a.a., GGDEF domain protein from Pseudomonas putida KT2440

 Score =  244 bits (623), Expect = 7e-69
 Identities = 157/419 (37%), Positives = 232/419 (55%), Gaps = 17/419 (4%)

Query: 83  DKLTGLINRVGLKRTLASLMPITQGTL------VLIDIYRFRYVNDLLGFVFGDILLKQF 136
           D LTGL NR  L++ L  ++ +  G L      + + +  F+ +N+   +  GD LL   
Sbjct: 263 DFLTGLPNRQQLQQQLDKIL-VDGGRLQHRVAVLCVGLDDFKGINEQFSYQVGDQLLLAL 321

Query: 137 AERLTSLSLKPKLIARLNGDEFFLYY---EQSLSQEQLLH-LRGRLQVPFNIKDTPVSVR 192
           A+RL + S +   +ARL GD+F L     EQ     +L   +   L+VPF++    + +R
Sbjct: 322 ADRLRAHSGRLGALARLGGDQFALVQANIEQPYEAAELAQSILDDLEVPFDLDHEQIRLR 381

Query: 193 LQIGCLQLAQHHADVSNMLRRLD--LALKKARS-TRIAIACYSENDDIRQLRELKIIDSL 249
             IG     +       +L++ +  + L KARS  R      S + ++R+ REL+    L
Sbjct: 382 ATIGITLFPEDGDSTEKLLQKAEQTMTLAKARSRNRYQFYIASVDSEMRRRRELE--KDL 439

Query: 250 PNGLQRNHLYMVYQPKQDVSSEGCTQVEALIRWEHEELGVISPGEFIPLAECAGMIDLVS 309
              L RN LY+VYQP+          VEAL+RW+H ELG++ P +FIPLAE  G I  + 
Sbjct: 440 REALPRNQLYLVYQPQISYRDHRVVGVEALLRWQHPELGMVPPDQFIPLAEQNGSIISIG 499

Query: 310 HWALEQVLQQQVKWRLAGIS-VCVALNLSTRDLDSETLPHELDARLKHYQLPPECLMIEI 368
            W L+Q  +Q  +W   G S + +A+NLST  L    LP  ++  L+ Y+LPP  L +E+
Sbjct: 500 EWVLDQACRQLREWHDQGFSDLRMAVNLSTVQLHHSELPRVVNNLLQAYRLPPRSLELEV 559

Query: 369 TESTLMADLNKAVDTLVQIRRLGIHLAIDDFGTGHSSLAYLKHLPANEVKIDKVFLQDLK 428
           TE+ LM D++ A   L+ +RR G  +AIDDFGTG+SSL+YLK LP +++KIDK F+QDL 
Sbjct: 560 TETGLMEDISTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKIDKSFVQDLL 619

Query: 429 PNQPSEYILEASVNIAKKLGYEVTVEGVETQEVRDLLVKMGVDRIQGLCYAKPMRAVEL 487
            +     I+ A + + K LG +V  EGVET E    +V  G    QG  Y+KP+ A EL
Sbjct: 620 DDDDDATIVRAIIQLGKSLGMQVIAEGVETAEQETYIVAQGCHEGQGYHYSKPLSAREL 678