Pairwise Alignments

Query, 509 a.a., cyclic nucleotide phosphodiesterase, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1276 a.a., Sensory box protein from Pseudomonas putida KT2440

 Score =  218 bits (554), Expect = 1e-60
 Identities = 134/421 (31%), Positives = 214/421 (50%), Gaps = 15/421 (3%)

Query: 83   DKLTGLINRVGLKRTLASLMPITQG-----TLVLIDIYRFRYVNDLLGFVFGDILLKQFA 137
            D LT L NR   +  L + +   +       L+ +D+ RF+ +ND LG   GD +LK  A
Sbjct: 844  DALTHLPNRTLFQDRLYNALQQAERQKAWVVLMFLDLDRFKPINDSLGHAAGDRMLKDMA 903

Query: 138  ERLTSLSLKPKLIARLNGDEFFLYYEQSLSQEQLLH--------LRGRLQVPFNIKDTPV 189
             RL +       +AR+ GDEF L  +   ++E  L+        + G L  PF +++   
Sbjct: 904  LRLLACVDDDDTVARMGGDEFTLLLQPRPTREMALNRAIHVAENILGSLVRPFVLENREF 963

Query: 190  SVRLQIGCLQLAQHHADVSNMLRRLDLALKKARST-RIAIACYSENDDIRQLRELKIIDS 248
             V   IG     Q  +++S +++  D A+  A+   +     Y    +   L  L++   
Sbjct: 964  FVTASIGIALSPQDGSELSQLMKNADTAMYHAKERGKNNFQFYQAEMNASALERLELESD 1023

Query: 249  LPNGLQRNHLYMVYQPKQDVSSEGCTQVEALIRWEHEELGVISPGEFIPLAECAGMIDLV 308
            L + +++N   + YQP+     +  T  EAL+RW H   G++ PG+FIP+ E  G++  V
Sbjct: 1024 LRHAMEQNEFILYYQPQFSGDGKRLTGAEALLRWRHPTRGLVPPGDFIPVIEELGLVVDV 1083

Query: 309  SHWALEQVLQQQVKWRLAGISVC-VALNLSTRDLDSETLPHELDARLKHYQLPPECLMIE 367
              W L +  +Q   W  A + V  V++N+S R      L   +   L+   LPP CL +E
Sbjct: 1084 GDWVLREASRQLKAWHKAKVRVPKVSVNISARQFSDGQLGTRIANILEESGLPPACLELE 1143

Query: 368  ITESTLMADLNKAVDTLVQIRRLGIHLAIDDFGTGHSSLAYLKHLPANEVKIDKVFLQDL 427
            +TES LM ++N+A+  L  ++ LG+ +A+DDFGTG+SSL YLK  P + +KID+ F+  L
Sbjct: 1144 LTESILMREVNEALQILASLKNLGLSIAVDDFGTGYSSLNYLKQFPIDVLKIDRTFVDGL 1203

Query: 428  KPNQPSEYILEASVNIAKKLGYEVTVEGVETQEVRDLLVKMGVDRIQGLCYAKPMRAVEL 487
               +    I  A + +A  L   V  EGVET E  + L + G D +QG  + +PM A + 
Sbjct: 1204 PEGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLEFLREHGCDEVQGYLFGRPMPAHQF 1263

Query: 488  E 488
            E
Sbjct: 1264 E 1264