Pairwise Alignments

Query, 454 a.a., DNA repair protein RadA (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 455 a.a., DNA repair protein RadA from Pseudomonas fluorescens GW456-L13

 Score =  575 bits (1483), Expect = e-169
 Identities = 282/457 (61%), Positives = 358/457 (78%), Gaps = 7/457 (1%)

Query: 1   MAKNKTAYVCNECGQDFPRWQGQCSACHEWNTITEVRL---GAASPGRGTKFAGYAGAGS 57
           MAK K  Y C ECG  FP+W GQC  C  WNT+TE  +   GAA+P   T +AG      
Sbjct: 1   MAKAKRMYGCTECGSTFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQ----Q 56

Query: 58  SEVKTLDQIDLNALPRIVSHFGELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQTLCHLA 117
           +++KTL ++ +  +PR  +   ELDRVLGGG+V GS +LIGG PG GKST+LLQTLC+LA
Sbjct: 57  AQIKTLAEVSVEEIPRFSTASSELDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLA 116

Query: 118 EQMPALYVTGEESLQQVAMRAHRLGLPTNKLRMLSETSVEQICEIALQESPKVIVVDSIQ 177
           + MPALYVTGEES QQVAMRA RLGLP ++LR+++ET +E I   A QE PKV+V+DSIQ
Sbjct: 117 KSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIEAIIATARQEKPKVMVIDSIQ 176

Query: 178 VMHMSDVASSPGSVSQVRESASYLTRFAKQHGIAVIMVGHVTKDGSLAGPKVLEHCIDCS 237
            +    + S+PG VSQVRESA+ L R+AKQ G A+ +VGHVTK+G+LAGP+VLEH +D  
Sbjct: 177 TIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTV 236

Query: 238 VMFEGDSDSRYRTLRSHKNRFGAINELGVFAMTERGLKEVANPSAIFLSRGEEESSGSLV 297
           + FEG+SD R R LR+ KNRFGA+NELGVF MT++GLKEV+NPSAIFL+R +EE  GS+V
Sbjct: 237 LYFEGESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVV 296

Query: 298 MVVWEGTRPLLVELQVLVDNSAMSNPRRVAVGMDANRLAMLLAVMHRHGGLQMSDQDVFV 357
           M  WEGTRP+LVE+Q LVD+S ++NPRRV +G+D NRLAMLLAV+HRHGG+   DQDVF+
Sbjct: 297 MATWEGTRPMLVEVQALVDDSHLANPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFL 356

Query: 358 NVVGGVKVTETSADLTLLLAMVSSFRGDILPSDLVVFGEVGLSGEIRPVPNGQERLVEAA 417
           NVVGGVKV ET++DL L+ A++SS R   LP DL+VFGEVGLSGE+RPVP+GQERL EAA
Sbjct: 357 NVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSGEVRPVPSGQERLKEAA 416

Query: 418 KHGFKRAIVPRANVPKKPPVGMEVVGVSKLSEALEAI 454
           KHGFKRAIVP+ N PK+ P G++++ V++L +AL+A+
Sbjct: 417 KHGFKRAIVPKGNAPKEAPAGLQIIAVTRLEQALDAL 453