Pairwise Alignments

Query, 454 a.a., DNA repair protein RadA (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 467 a.a., DNA repair protein RadA from Rhizobium sp. OAE497

 Score =  375 bits (962), Expect = e-108
 Identities = 201/444 (45%), Positives = 283/444 (63%), Gaps = 21/444 (4%)

Query: 1   MAKNKTAYVCNECGQDFPRWQGQCSACHEWNTITEVR----LG---AASPGRGTKFAGYA 53
           MAK +T + C  CG    RW G+C  C EWNTI E      +G   A +P +G   A  A
Sbjct: 1   MAKARTQFTCQNCGTVHNRWAGKCEGCGEWNTIVEEDPMGGIGGGPAKTPKKGRPVALTA 60

Query: 54  GAGSSEVKTLDQIDLNALPRIVSHFGELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQTL 113
            +G          ++   PRI +   ELDR LGGG V GSA+L+GG PG GKSTLL+Q  
Sbjct: 61  LSG----------EIEEAPRIHTGISELDRALGGGFVRGSAVLVGGDPGIGKSTLLMQAA 110

Query: 114 CHLAEQ-MPALYVTGEESLQQVAMRAHRLGLPTNKLRMLSETSVEQI-CEIALQESPKVI 171
             L+ +    +YV+GEE++ QV +RA RL      + + +ET+VE I   +A  + P ++
Sbjct: 111 AALSRRGHKIIYVSGEEAVAQVRLRAQRLSAADTDVMLAAETNVEDILATLAEGKRPDLV 170

Query: 172 VVDSIQVMHMSDVASSPGSVSQVRESASYLTRFAKQHGIAVIMVGHVTKDGSLAGPKVLE 231
           ++DSIQ +      S+PG+V+QVR     + RFAKQ G A+++VGHVTKDG +AGP+V+E
Sbjct: 171 IIDSIQTLWSDLAESAPGTVTQVRTGVQAMIRFAKQTGAAMVLVGHVTKDGQIAGPRVVE 230

Query: 232 HCIDCSVMFEGDSDSRYRTLRSHKNRFGAINELGVFAMTERGLKEVANPSAIFLSRGEEE 291
           H +D  + FEGD    YR LR+ KNRFG  +E+GVF M+++GL+EVANPS +FL    E+
Sbjct: 231 HMVDAVLYFEGDRGHHYRILRTVKNRFGPTDEIGVFEMSDKGLREVANPSELFLGERNEK 290

Query: 292 SSGSLVMVVWEGTRPLLVELQVLVDNSAMSNPRRVAVGMDANRLAMLLAVMHRHGGLQMS 351
           S G+ V    EGTRP+LVE+Q LV  +++  PRR  VG D+ RL+M+LAV+  H G+++ 
Sbjct: 291 SPGAAVFAGMEGTRPILVEVQALVAPTSLGTPRRAIVGWDSARLSMILAVLEAHCGVKLG 350

Query: 352 DQDVFVNVVGGVKVTETSADLTLLLAMVSSFRGDILPSDLVVFGEVGLSGEIRPVPNGQE 411
             DV++N+ GG +++E +ADL +  A+VSS  G  LP+D V FGEV LSG +RPV +  +
Sbjct: 351 QHDVYLNIAGGYRISEPAADLAVASALVSSLAGIALPADCVYFGEVSLSGAVRPVAHTAQ 410

Query: 412 RLVEAAKHGFKRAIVP--RANVPK 433
           RL EA K GF  A++P   A++PK
Sbjct: 411 RLKEAEKLGFSAALLPTATADLPK 434