Pairwise Alignments

Query, 454 a.a., DNA repair protein RadA (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 455 a.a., DNA repair protein RadA from Pseudomonas sp. S08-1

 Score =  570 bits (1469), Expect = e-167
 Identities = 280/458 (61%), Positives = 360/458 (78%), Gaps = 9/458 (1%)

Query: 1   MAKNKTAYVCNECGQDFPRWQGQCSACHEWNTITEVRL---GAASP-GRGTKFAGYAGAG 56
           MAK K  Y C ECG  FP+W GQC  C  WNT+ E  +   GAA+P GRG    G+AG  
Sbjct: 1   MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLNETMIESGGAAAPSGRG----GWAGQ- 55

Query: 57  SSEVKTLDQIDLNALPRIVSHFGELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQTLCHL 116
            +++KTL ++ +  +PR  +  GELDRVLGGG+V GS +LIGG PG GKST+LLQTLC++
Sbjct: 56  QAQIKTLAEVSVEEVPRFSTVSGELDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNI 115

Query: 117 AEQMPALYVTGEESLQQVAMRAHRLGLPTNKLRMLSETSVEQICEIALQESPKVIVVDSI 176
           A+++PALYVTGEES QQVAMRA RL LP +KL++++ET +E I ++A +E PKV+V+DSI
Sbjct: 116 AQRLPALYVTGEESQQQVAMRARRLELPQDKLKVMTETCIESIIDVARREQPKVMVIDSI 175

Query: 177 QVMHMSDVASSPGSVSQVRESASYLTRFAKQHGIAVIMVGHVTKDGSLAGPKVLEHCIDC 236
           Q +    + S+PG V+QVRESA+ L R+AKQ G A+ +VGHVTK+G+LAGP+VLEH +D 
Sbjct: 176 QTIFTEQLQSAPGGVAQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDT 235

Query: 237 SVMFEGDSDSRYRTLRSHKNRFGAINELGVFAMTERGLKEVANPSAIFLSRGEEESSGSL 296
            + FEG+SD R R LR+ KNRFGA+NELGVF MT++GLKEV NPSAIFL+R +E   GS+
Sbjct: 236 VLYFEGESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVTNPSAIFLTRAQEAVPGSV 295

Query: 297 VMVVWEGTRPLLVELQVLVDNSAMSNPRRVAVGMDANRLAMLLAVMHRHGGLQMSDQDVF 356
           VM  WEGTRP+LVE+Q LVD S M+NP+RV +G+D NRLAMLLAV+HRHGG+   DQDVF
Sbjct: 296 VMATWEGTRPMLVEVQALVDTSHMANPKRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVF 355

Query: 357 VNVVGGVKVTETSADLTLLLAMVSSFRGDILPSDLVVFGEVGLSGEIRPVPNGQERLVEA 416
           +NVVGGVKV ET++DL L+ A++SS R   LP DL+VFGE+GLSGEIRPVP+GQERL EA
Sbjct: 356 LNVVGGVKVLETASDLALMAAVISSLRNKPLPHDLLVFGEIGLSGEIRPVPSGQERLKEA 415

Query: 417 AKHGFKRAIVPRANVPKKPPVGMEVVGVSKLSEALEAI 454
           AKHGFKRAIVP+ N PK+ P G++V+ V++L +AL+A+
Sbjct: 416 AKHGFKRAIVPKGNAPKEAPAGLQVIAVTRLEQALDAL 453